Entry sw:UVRB_GEMAT

ID   UVRB_GEMAT              Reviewed;         700 AA.
AC   C1A4H0;
DT   22-SEP-2009, integrated into UniProtKB/Swiss-Prot.
DT   26-MAY-2009, sequence version 1.
DT   02-NOV-2016, entry version 50.
DE   RecName: Full=UvrABC system protein B {ECO:0000255|HAMAP-Rule:MF_00204};
DE            Short=Protein UvrB {ECO:0000255|HAMAP-Rule:MF_00204};
DE   AltName: Full=Excinuclease ABC subunit B {ECO:0000255|HAMAP-Rule:MF_00204};
GN   Name=uvrB {ECO:0000255|HAMAP-Rule:MF_00204};
GN   OrderedLocusNames=GAU_1953;
OS   Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC
OS   100505).
OC   Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae;
OC   Gemmatimonas.
OX   NCBI_TaxID=379066;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=T-27 / DSM 14586 / JCM 11422 / NBRC 100505;
RA   Takasaki K., Ichikawa N., Miura H., Matsushita S., Watanabe Y.,
RA   Oguchi A., Ankai A., Yashiro I., Takahashi M., Terui Y., Fukui S.,
RA   Yokoyama H., Tanikawa S., Hanada S., Kamagata Y., Fujita N.;
RT   "Complete genome sequence of Gemmatimonas aurantiaca T-27 that
RT   represents a novel phylum Gemmatimonadetes.";
RL   Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: The UvrABC repair system catalyzes the recognition and
CC       processing of DNA lesions. A damage recognition complex composed
CC       of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon
CC       binding of the UvrA(2)B(2) complex to a putative damaged site, the
CC       DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP
CC       binding by UvrB and probably causes local melting of the DNA
CC       helix, facilitating insertion of UvrB beta-hairpin between the DNA
CC       strands. Then UvrB probes one DNA strand for the presence of a
CC       lesion. If a lesion is found the UvrA subunits dissociate and the
CC       UvrB-DNA preincision complex is formed. This complex is
CC       subsequently bound by UvrC and the second UvrB is released. If no
CC       lesion is found, the DNA wraps around the other UvrB subunit that
CC       will check the other stand for damage. {ECO:0000255|HAMAP-
CC       Rule:MF_00204}.
CC   -!- SUBUNIT: Forms a heterotetramer with UvrA during the search for
CC       lesions. Interacts with UvrC in an incision complex.
CC       {ECO:0000255|HAMAP-Rule:MF_00204}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00204}.
CC   -!- DOMAIN: The beta-hairpin motif is involved in DNA binding.
CC       {ECO:0000255|HAMAP-Rule:MF_00204}.
CC   -!- SIMILARITY: Belongs to the UvrB family. {ECO:0000255|HAMAP-
CC       Rule:MF_00204}.
CC   -!- SIMILARITY: Contains 1 helicase ATP-binding domain.
CC       {ECO:0000255|HAMAP-Rule:MF_00204}.
CC   -!- SIMILARITY: Contains 1 helicase C-terminal domain.
CC       {ECO:0000255|HAMAP-Rule:MF_00204}.
CC   -!- SIMILARITY: Contains 1 UVR domain. {ECO:0000255|HAMAP-
CC       Rule:MF_00204}.
DR   EMBL; AP009153; BAH38995.1; -; Genomic_DNA.
DR   RefSeq; WP_012683442.1; NC_012489.1.
DR   STRING; 379066.GAU_1953; -.
DR   EnsemblBacteria; BAH38995; BAH38995; GAU_1953.
DR   KEGG; gau:GAU_1953; -.
DR   PATRIC; 21956820; VBIGemAur55831_2003.
DR   eggNOG; ENOG4105CCW; Bacteria.
DR   eggNOG; COG0556; LUCA.
DR   HOGENOM; HOG000073580; -.
DR   KO; K03702; -.
DR   OMA; QEYVDRM; -.
DR   OrthoDB; POG091H02LK; -.
DR   Proteomes; UP000002209; Chromosome.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP.
DR   GO; GO:0009381; F:excinuclease ABC activity; IEA:UniProtKB-HAMAP.
DR   GO; GO:0004386; F:helicase activity; IEA:UniProtKB-HAMAP.
DR   GO; GO:0006289; P:nucleotide-excision repair; IEA:UniProtKB-HAMAP.
DR   GO; GO:0009432; P:SOS response; IEA:UniProtKB-HAMAP.
DR   Gene3D; 3.40.50.300; -; 4.
DR   Gene3D; 4.10.860.10; -; 1.
DR   HAMAP; MF_00204; UvrB; 1.
DR   InterPro; IPR006935; Helicase/UvrB_N.
DR   InterPro; IPR014001; Helicase_ATP-bd.
DR   InterPro; IPR001650; Helicase_C.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR001943; UVR_dom.
DR   InterPro; IPR004807; UvrB.
DR   InterPro; IPR024759; UvrB_YAD/RRR_dom.
DR   PANTHER; PTHR24029; PTHR24029; 1.
DR   Pfam; PF00271; Helicase_C; 1.
DR   Pfam; PF04851; ResIII; 1.
DR   Pfam; PF02151; UVR; 1.
DR   Pfam; PF12344; UvrB; 1.
DR   SMART; SM00487; DEXDc; 1.
DR   SMART; SM00490; HELICc; 1.
DR   SUPFAM; SSF46600; SSF46600; 1.
DR   SUPFAM; SSF52540; SSF52540; 3.
DR   TIGRFAMs; TIGR00631; uvrb; 1.
DR   PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR   PROSITE; PS51194; HELICASE_CTER; 1.
DR   PROSITE; PS50151; UVR; 1.
PE   3: Inferred from homology;
KW   ATP-binding; Complete proteome; Cytoplasm; DNA damage; DNA excision;
KW   DNA repair; Excision nuclease; Helicase; Hydrolase;
KW   Nucleotide-binding; Reference proteome; SOS response.
FT   CHAIN         1    700       UvrABC system protein B.
FT                                /FTId=PRO_1000204134.
FT   DOMAIN       26    183       Helicase ATP-binding. {ECO:0000255|HAMAP-
FT                                Rule:MF_00204}.
FT   DOMAIN      430    596       Helicase C-terminal. {ECO:0000255|HAMAP-
FT                                Rule:MF_00204}.
FT   DOMAIN      631    666       UVR. {ECO:0000255|HAMAP-Rule:MF_00204}.
FT   NP_BIND      39     46       ATP. {ECO:0000255|HAMAP-Rule:MF_00204}.
FT   MOTIF        92    115       Beta-hairpin.
CC   --------------------------------------------------------------------------
CC   The following FT lines are automated annotations from the MyHits database.
CC   --------------------------------------------------------------------------
FT   MYHIT       459    545       ismart:HELICc [T]
FT   MYHIT         3    666       ihamap:UvrB [T]
FT   MYHIT       435    543       ipfam:Helicase_C [T]
FT   MYHIT       551    592       ipfam:UvrB [T]
FT   MYHIT       633    664       ipfam:UVR [T]
FT   MYHIT       430    596       iprf:HELICASE_CTER [T]
FT   MYHIT       631    666       iprf:UVR [T]
FT   MYHIT        26    183       iprf:HELICASE_ATP_BIND_1 [T]
FT   MYHIT        16    119       ipfam:ResIII [T]
FT   MYHIT         9    424       ismart:DEXDc [T]
SQ   SEQUENCE   700 AA;  78628 MW;  3B9628FDB29CFBB5 CRC64;
     MTAPFRLHAP FAPAGDQPRA ITELSSGLHR GDRIQTLLGV TGSGKTMTMA NVIADWGRPT
     LVLSHNKTLA AQLYGELKSF FPNNAVEYFI SYYDYYQPEA YVPSSDTYIE KDASINEDID
     RLRLRATSSL MERDDVVIVS TVSAIYGLGD PVQYRERMVA LSRGQQIARD DILRALVGIQ
     YLRNDVAFER GTFRVRGDTV EILPAYEEQA VRIELWGDEI ERISKIDPVT GETIAALERM
     AIYPAKHFIT NRPTIERASM AIRDELATRL AELRMAGKLL EAQRLEQRTQ FDLEMLMEIG
     TCAGIENYSR HISGREAGER PACLLDYFPD DYLVVVDESH VTLPQIRAMY NGDRARKLTL
     VDYGFRLPSA LDNRPLVFDE FMSLVPRLVN VSATPGELEL QLSEGVVVEQ VIRPTGLLDP
     VLEVRPVKGQ VDDLLHEIRA RERRGERVLV TTLTKRMSED LTDYLQQMGV RVRYMHSDID
     AIERMEIVRG LRLGEFDVLV GINLLREGLD MPEVSLVAIL DADQEGFLRS DRSLIQTIGR
     AARNLHGMAI LYGDRITGSM QRAIDETTRR RTIQREHNEA HGIVPRGVTK SVDEVRFITR
     VADARVEREG EAPAPRRLAS ESAPRSREEL ETLVGELEIA MREAAVALDF EAAARLRDQL
     FEVRTALGQA PSEARGNAQA PKRPPGSAPQ RRAGGGRRGR
//