ExPASy_SIB
MyHits
MSA Hub
user:
GUEST
width:
600
Tools
Search ...
Pattern Search
BLASTP/PSI-BLAST
PFSEARCH (profile)
HMMER3 (profile-HMM)
Motif Scan
Query ...
by Protein
by Motif
Align...
MAFFT
Profile Align
Classify ...
JACOP
Tools ...
Reformat MSA
Reformat SEQ
Dotlet
ProtoGene
Hub
Protein Hub
MSA Hub
Results
Stored results
Private area
Misc
Help Pages
Deprecated
Search...
HMMER2 (profile-HMM)
Align...
CLUSTALW
Translate ...
Translator
ESTScan
Privacy notice
MSA Input
multiple sequence alignment (MSA)
examples
multiple FASTA format
ALN/ClustalW format
send results to...
...to PSI-blast search (fast)
...to PFTOOLS Search (profile, slow)
...to HMMER2 Search (profile-HMM, slow)
...to HMMER3 Search (profile-HMM, slow)
...to Profile Align (slow)
...to MAFFT (re-align, fast)
...to ClustalW (re-align)
...to ProtoGene (CDS retrieval)
...to Reformat MSA (your sequences)
...to Protein Hub
Selector
Selector
Inspect the following information
ID
AC
DT
DE
GN
OS
OG
OC
OX
Reference lines
CC
DR
KW
FT
Sequence lines
Pre-select proteins by comparing their mutual identities
100 % (all)
90 %
80 %
70 %
60 %
50 %
Catalogue
Catalogue
: Sequence Element Viewer. Retrieve the original entry and annotations
Output selection
HTML walker [5 prot./page]
HTML walker [10 prot./page]
HTML walker [50 prot./page]
PDF/postscript on A4
Pixel per residue
0.2
0.5
1
2
3
4
5
Graphic options
to scale on multiple line
to scale on a single line
shrink to fit line width
Display weak matches
Yes
No
MSA Viewer
MSA Viewer
: Multiple Sequence Alignment viewer
SEView
SEView
: Java Based Sequence Element Viewer. Retrieve the original entry and annotations
Number of proteins per page
1
5
10
20
50
Display weak matches
Yes
No