Entry sw:SAC51_ARATH

ID   SAC51_ARATH             Reviewed;         348 AA.
AC   Q9FMF4;
DT   16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT   01-MAR-2001, sequence version 1.
DT   02-NOV-2016, entry version 87.
DE   RecName: Full=Transcription factor SAC51;
DE   AltName: Full=Basic helix-loop-helix protein 142;
DE            Short=AtbHLH142;
DE            Short=bHLH 142;
DE   AltName: Full=Protein SUPPRESSOR OF ACAULIS 51;
DE   AltName: Full=Transcription factor EN 128;
DE   AltName: Full=bHLH transcription factor bHLH142;
GN   Name=SAC51; Synonyms=BHLH142, EN128; OrderedLocusNames=At5g64340;
GN   ORFNames=MSJ1.18;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
OC   Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
OC   Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=9501997; DOI=10.1093/dnares/4.6.401;
RA   Nakamura Y., Sato S., Kaneko T., Kotani H., Asamizu E., Miyajima N.,
RA   Tabata S.;
RT   "Structural analysis of Arabidopsis thaliana chromosome 5. III.
RT   Sequence features of the regions of 1,191,918 bp covered by seventeen
RT   physically assigned P1 clones.";
RL   DNA Res. 4:401-414(1997).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RG   The Arabidopsis Information Resource (TAIR);
RL   Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases.
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=14593172; DOI=10.1126/science.1088305;
RA   Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
RA   Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
RA   Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
RA   Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
RA   Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
RA   Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
RA   Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
RA   Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
RA   Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
RA   Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
RA   Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
RA   Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   "Empirical analysis of transcriptional activity in the Arabidopsis
RT   genome.";
RL   Science 302:842-846(2003).
RN   [4]
RP   FUNCTION, AND TISSUE SPECIFICITY.
RX   PubMed=16936072; DOI=10.1242/dev.02535;
RA   Imai A., Hanzawa Y., Komura M., Yamamoto K.T., Komeda Y.,
RA   Takahashi T.;
RT   "The dwarf phenotype of the Arabidopsis acl5 mutant is suppressed by a
RT   mutation in an upstream ORF of a bHLH gene.";
RL   Development 133:3575-3585(2006).
CC   -!- FUNCTION: Transcription factor. Involved in stem elongation,
CC       probably by regulating a subset of genes involved in this process.
CC       {ECO:0000269|PubMed:16936072}.
CC   -!- SUBUNIT: Homodimer. {ECO:0000305}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
CC       ProRule:PRU00981}.
CC   -!- TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves,
CC       and flowers. {ECO:0000269|PubMed:16936072}.
CC   -!- SIMILARITY: Contains 1 bHLH (basic helix-loop-helix) domain.
CC       {ECO:0000255|PROSITE-ProRule:PRU00981}.
DR   EMBL; AB008268; BAB09865.1; -; Genomic_DNA.
DR   EMBL; CP002688; AED97872.1; -; Genomic_DNA.
DR   EMBL; AY062561; AAL32639.1; -; mRNA.
DR   EMBL; AY093333; AAM13332.1; -; mRNA.
DR   RefSeq; NP_201239.1; NM_125830.2.
DR   UniGene; At.49218; -.
DR   UniGene; At.71062; -.
DR   ProteinModelPortal; Q9FMF4; -.
DR   STRING; 3702.AT5G64340.1; -.
DR   PaxDb; Q9FMF4; -.
DR   EnsemblPlants; AT5G64340.1; AT5G64340.1; AT5G64340.
DR   GeneID; 836555; -.
DR   Gramene; AT5G64340.1; AT5G64340.1; AT5G64340.
DR   KEGG; ath:AT5G64340; -.
DR   TAIR; AT5G64340; -.
DR   eggNOG; ENOG410J3Z3; Eukaryota.
DR   eggNOG; ENOG410Y8WP; LUCA.
DR   HOGENOM; HOG000090494; -.
DR   InParanoid; Q9FMF4; -.
DR   OMA; TESEMHE; -.
DR   OrthoDB; EOG09360ILW; -.
DR   PhylomeDB; Q9FMF4; -.
DR   PRO; PR:Q9FMF4; -.
DR   Proteomes; UP000006548; Chromosome 5.
DR   Genevisible; Q9FMF4; AT.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR   GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
DR   GO; GO:0009826; P:unidimensional cell growth; IMP:TAIR.
DR   InterPro; IPR011598; bHLH_dom.
DR   SUPFAM; SSF47459; SSF47459; 1.
DR   PROSITE; PS50888; BHLH; 1.
PE   2: Evidence at transcript level;
KW   Complete proteome; DNA-binding; Nucleus; Reference proteome;
KW   Transcription; Transcription regulation.
FT   CHAIN         1    348       Transcription factor SAC51.
FT                                /FTId=PRO_0000358854.
FT   DOMAIN      260    309       bHLH. {ECO:0000255|PROSITE-
FT                                ProRule:PRU00981}.
CC   --------------------------------------------------------------------------
CC   The following FT lines are automated annotations from the MyHits database.
CC   --------------------------------------------------------------------------
FT   MYHIT       260    309       iprf:BHLH [T]
SQ   SEQUENCE   348 AA;  38702 MW;  62FCFC5735CB8EAE CRC64;
     MPLDKRQRDL PLGLSPQACF KDIVGRSVLP RIPLPELGKL YAAKLQARCL QPPPFQSLLC
     SHDKESYGKR FSRSDMRSWC AAATTTTTPL GALESSQKRL LIFDQSGDQT RLLQCPFPLR
     FPSHAAAEPV KLSELQGIEK AFKEDGEEFH KSDGTESEMH EDTEEINALL YSDDDYDDDC
     ESDDEVMSTG HSPYPNEGVC NKRELEEIDG PCKRQKLLDK VNNISDLSSL VGTESSTQLN
     GSSFLKDKKL PESKTISTKE DTGSGLSNEQ SKKDKIRTAL KILESVVPGA KGNEALLLLD
     EAIDYLKLLK RDLISTEVKN QSSTTHKSPI LLLKETTWGT RNLQTDKA
//