MyHits has reached its end of life and no longer provides data or services. Thank you for your support and trust for more than 23 years!
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
- MyHits
| Description | RecName: Full=30S ribosomal protein S4, chloroplastic; |
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| MyHits synonyms | RR4_CHAVU , Q1ACM7 , FAE92FBD7294F23B |
 Legends: 1, ipat:RIBOSOMAL_S4 [T].
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ID RR4_CHAVU Reviewed; 206 AA.
AC Q1ACM7;
DT 06-FEB-2007, integrated into UniProtKB/Swiss-Prot.
DT 11-JUL-2006, sequence version 1.
DT 05-OCT-2016, entry version 44.
DE RecName: Full=30S ribosomal protein S4, chloroplastic;
GN Name=rps4;
OS Chara vulgaris (Common stonewort).
OG Plastid; Chloroplast.
OC Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
OC Characeae; Chara.
OX NCBI_TaxID=55564;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=16611644; DOI=10.1093/molbev/msk018;
RA Turmel M., Otis C., Lemieux C.;
RT "The chloroplast genome sequence of Chara vulgaris sheds new light
RT into the closest green algal relatives of land plants.";
RL Mol. Biol. Evol. 23:1324-1338(2006).
CC -!- FUNCTION: One of the primary rRNA binding proteins, it binds
CC directly to 16S rRNA where it nucleates assembly of the body of
CC the 30S subunit. {ECO:0000250}.
CC -!- FUNCTION: With S5 and S12 plays an important role in translational
CC accuracy. {ECO:0000250}.
CC -!- SUBUNIT: Part of the 30S ribosomal subunit. Contacts protein S5.
CC The interaction surface between S4 and S5 is involved in control
CC of translational fidelity (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast.
CC -!- SIMILARITY: Belongs to the ribosomal protein S4P family.
CC {ECO:0000305}.
CC -!- SIMILARITY: Contains 1 S4 RNA-binding domain. {ECO:0000305}.
DR EMBL; DQ229107; ABA61969.1; -; Genomic_DNA.
DR RefSeq; YP_635720.1; NC_008097.1.
DR ProteinModelPortal; Q1ACM7; -.
DR GeneID; 4100340; -.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0015935; C:small ribosomal subunit; IEA:InterPro.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP.
DR Gene3D; 1.10.1050.10; -; 1.
DR Gene3D; 3.10.290.10; -; 1.
DR HAMAP; MF_01306_B; Ribosomal_S4_B; 1.
DR InterPro; IPR022801; Ribosomal_S4/S9.
DR InterPro; IPR001912; Ribosomal_S4/S9_N.
DR InterPro; IPR005709; Ribosomal_S4_bac-type.
DR InterPro; IPR018079; Ribosomal_S4_CS.
DR InterPro; IPR002942; S4_RNA-bd.
DR PANTHER; PTHR11831; PTHR11831; 1.
DR Pfam; PF00163; Ribosomal_S4; 1.
DR Pfam; PF01479; S4; 1.
DR SMART; SM01390; Ribosomal_S4; 1.
DR SMART; SM00363; S4; 1.
DR TIGRFAMs; TIGR01017; rpsD_bact; 1.
DR PROSITE; PS00632; RIBOSOMAL_S4; 1.
DR PROSITE; PS50889; S4; 1.
PE 3: Inferred from homology;
KW Chloroplast; Plastid; Ribonucleoprotein; Ribosomal protein;
KW RNA-binding; rRNA-binding.
FT CHAIN 1 206 30S ribosomal protein S4, chloroplastic.
FT /FTId=PRO_0000277006.
FT DOMAIN 94 152 S4 RNA-binding.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 3 93 ismart:Ribosomal_S4 [T]
FT MYHIT 92 116 ipat:RIBOSOMAL_S4 [T]
FT MYHIT 3 93 ipfam:Ribosomal_S4 [T]
FT MYHIT 1 204 ihamap:Ribosomal_S4_B [T]
FT MYHIT 94 152 iprf:S4 [T]
FT MYHIT 94 154 ismart:S4 [T]
FT MYHIT 94 141 ipfam:S4 [T]
SQ SEQUENCE 206 AA; 23512 MW; FAE92FBD7294F23B CRC64;
MSRYRGPRLK IVRRLGPLPG FTQKLYKSKS QYLGSSTTSS SSNKKISQYN IRLLEKQKLR
FYYGLTERQL LKYVTIARNA KGPTGQVLLQ LLEMRLDNIV FRLGMAPTIP AARQLVNHRH
ILVNDFTVNI PSYSCKLGDK ISVQKRFESK TNIFANSTQS ASLKVPSHLT LNPAKNEGLV
HQIVDREFIG AKINELLVVE YYSRQV
//
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