ID RIMM_SYNP2 Reviewed; 175 AA.
AC B1XKY8;
DT 14-OCT-2008, integrated into UniProtKB/Swiss-Prot.
DT 20-MAY-2008, sequence version 1.
DT 02-NOV-2016, entry version 47.
DE RecName: Full=Ribosome maturation factor RimM {ECO:0000255|HAMAP-Rule:MF_00014};
GN Name=rimM {ECO:0000255|HAMAP-Rule:MF_00014};
GN OrderedLocusNames=SYNPCC7002_A1245;
OS Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum
OS quadruplicatum).
OC Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae;
OC Synechococcus.
OX NCBI_TaxID=32049;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 27264 / PCC 7002 / PR-6;
RA Li T., Zhao J., Zhao C., Liu Z., Zhao F., Marquardt J., Nomura C.T.,
RA Persson S., Detter J.C., Richardson P.M., Lanz C., Schuster S.C.,
RA Wang J., Li S., Huang X., Cai T., Yu Z., Luo J., Zhao J., Bryant D.A.;
RT "Complete sequence of Synechococcus sp. PCC 7002.";
RL Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: An accessory protein needed during the final step in the
CC assembly of 30S ribosomal subunit, possibly for assembly of the
CC head region. Probably interacts with S19. Essential for efficient
CC processing of 16S rRNA. May be needed both before and after RbfA
CC during the maturation of 16S rRNA. It has affinity for free
CC ribosomal 30S subunits but not for 70S ribosomes.
CC {ECO:0000255|HAMAP-Rule:MF_00014}.
CC -!- SUBUNIT: Binds ribosomal protein S19. {ECO:0000255|HAMAP-
CC Rule:MF_00014}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00014}.
CC -!- DOMAIN: The PRC barrel domain binds ribosomal protein S19.
CC {ECO:0000255|HAMAP-Rule:MF_00014}.
CC -!- SIMILARITY: Belongs to the RimM family. {ECO:0000255|HAMAP-
CC Rule:MF_00014}.
CC -!- SIMILARITY: Contains 1 PRC barrel domain. {ECO:0000255|HAMAP-
CC Rule:MF_00014}.
DR EMBL; CP000951; ACA99243.1; -; Genomic_DNA.
DR RefSeq; WP_012306866.1; NC_010475.1.
DR ProteinModelPortal; B1XKY8; -.
DR SMR; B1XKY8; -.
DR STRING; 32049.SYNPCC7002_A1245; -.
DR PRIDE; B1XKY8; -.
DR EnsemblBacteria; ACA99243; ACA99243; SYNPCC7002_A1245.
DR KEGG; syp:SYNPCC7002_A1245; -.
DR PATRIC; 23817046; VBISynSp37135_1474.
DR eggNOG; ENOG41080P6; Bacteria.
DR eggNOG; COG0806; LUCA.
DR HOGENOM; HOG000220991; -.
DR KO; K02860; -.
DR OMA; TSCHGIN; -.
DR OrthoDB; POG091H012K; -.
DR Proteomes; UP000001688; Chromosome.
DR GO; GO:0005840; C:ribosome; IEA:InterPro.
DR GO; GO:0043022; F:ribosome binding; IEA:InterPro.
DR GO; GO:0042274; P:ribosomal small subunit biogenesis; IEA:UniProtKB-HAMAP.
DR GO; GO:0006364; P:rRNA processing; IEA:InterPro.
DR Gene3D; 2.40.30.60; -; 1.
DR HAMAP; MF_00014; Ribosome_mat_RimM; 1.
DR InterPro; IPR011961; 16S_RimM.
DR InterPro; IPR027275; PRC-brl_dom.
DR InterPro; IPR011033; PRC_barrel-like.
DR InterPro; IPR002676; RimM.
DR InterPro; IPR009000; Transl_B-barrel.
DR Pfam; PF05239; PRC; 1.
DR Pfam; PF01782; RimM; 1.
DR SUPFAM; SSF50346; SSF50346; 1.
DR SUPFAM; SSF50447; SSF50447; 1.
DR TIGRFAMs; TIGR02273; 16S_RimM; 1.
PE 3: Inferred from homology;
KW Chaperone; Complete proteome; Cytoplasm; Reference proteome;
KW Ribosome biogenesis.
FT CHAIN 1 175 Ribosome maturation factor RimM.
FT /FTId=PRO_0000351800.
FT DOMAIN 99 172 PRC barrel. {ECO:0000255|HAMAP-
FT Rule:MF_00014}.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 6 172 ihamap:Ribosome_mat_RimM [T]
FT MYHIT 9 90 ipfam:RimM [T]
FT MYHIT 100 171 ipfam:PRC [T]
SQ SEQUENCE 175 AA; 19677 MW; B4C703213C2B1E6D CRC64;
MAEQDWIIIG QVVAAQGLKG EVRINPSTDF PERFEVPGQR WLQLPNQDPQ SVELERGRQI
PGKNLFVVKF EHIQDRTQAE NIRGAKVLVR AGDRPELEAD EYHVSDLIGL EVFDYNTQAK
LGIVSDLYTA AQDVLEVTDA NQKKHLVPFV KAIVPVVDLV ENRLEVDAPP GLFEI
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