MyHits has reached its end of life and no longer provides data or services. Thank you for your support and trust for more than 23 years!
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
- MyHits
| Description | RecName: Full=NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic; EC=1.6.5.-; AltName: Full=NAD(P)H dehydrogenase subunit 5; AltName: Full=NADH-plastoquinone oxidoreductase subunit 5; |
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| MyHits synonyms | NU5C_ARATH , P56752 , Q9MS93 , 1391A7875E9E7A29 |
 Legends: 1, TRANSMEM Helical. {ECO:0000255}; 2, ipfam:Proton_antipo_N [T].
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ID NU5C_ARATH Reviewed; 746 AA.
AC P56752; Q9MS93;
DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot.
DT 30-MAY-2000, sequence version 1.
DT 02-NOV-2016, entry version 110.
DE RecName: Full=NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic;
DE EC=1.6.5.-;
DE AltName: Full=NAD(P)H dehydrogenase subunit 5;
DE AltName: Full=NADH-plastoquinone oxidoreductase subunit 5;
GN Name=ndhF; OrderedLocusNames=AtCg01010;
OS Arabidopsis thaliana (Mouse-ear cress).
OG Plastid; Chloroplast.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
OC Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10574454; DOI=10.1093/dnares/6.5.283;
RA Sato S., Nakamura Y., Kaneko T., Asamizu E., Tabata S.;
RT "Complete structure of the chloroplast genome of Arabidopsis
RT thaliana.";
RL DNA Res. 6:283-290(1999).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 18-426.
RA Graham S.W., Reeves P.A., Burns A., Olmstead R.G.;
RT "Long branches in the seed plants and the root of the angiosperms.";
RL Submitted (FEB-2000) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via
CC FMN and iron-sulfur (Fe-S) centers, to quinones in the
CC photosynthetic chain and possibly in a chloroplast respiratory
CC chain. The immediate electron acceptor for the enzyme in this
CC species is believed to be plastoquinone. Couples the redox
CC reaction to proton translocation, and thus conserves the redox
CC energy in a proton gradient (By similarity). {ECO:0000250}.
CC -!- CATALYTIC ACTIVITY: NAD(P)H + plastoquinone = NAD(P)(+) +
CC plastoquinol.
CC -!- SUBUNIT: NDH is composed of at least 16 different subunits, 5 of
CC which are encoded in the nucleus. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid membrane
CC {ECO:0000250}; Multi-pass membrane protein {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the complex I subunit 5 family.
CC {ECO:0000305}.
DR EMBL; AP000423; BAA84434.1; -; Genomic_DNA.
DR EMBL; AF238049; AAF90035.1; -; Genomic_DNA.
DR RefSeq; NP_051106.1; NC_000932.1.
DR ProteinModelPortal; P56752; -.
DR STRING; 3702.ATCG01010.1; -.
DR TCDB; 3.D.1.8.1; the h(+) or na(+)-translocating nadh dehydrogenase (ndh) family.
DR PaxDb; P56752; -.
DR EnsemblPlants; ATCG01010.1; ATCG01010.1; ATCG01010.
DR GeneID; 844705; -.
DR Gramene; ATCG01010.1; ATCG01010.1; ATCG01010.
DR KEGG; ath:ArthCp071; -.
DR TAIR; ATCG01010; -.
DR eggNOG; KOG4668; Eukaryota.
DR eggNOG; COG1009; LUCA.
DR HOGENOM; HOG000100569; -.
DR InParanoid; P56752; -.
DR KO; K05577; -.
DR OMA; FENGRAQ; -.
DR OrthoDB; EOG0936045T; -.
DR BioCyc; ARA:ATCG01010-MONOMER; -.
DR PRO; PR:P56752; -.
DR Proteomes; UP000006548; Chloroplast.
DR Genevisible; P56752; AT.
DR GO; GO:0009535; C:chloroplast thylakoid membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0008137; F:NADH dehydrogenase (ubiquinone) activity; IEA:InterPro.
DR GO; GO:0048038; F:quinone binding; IEA:UniProtKB-KW.
DR GO; GO:0042773; P:ATP synthesis coupled electron transport; IEA:InterPro.
DR GO; GO:0006810; P:transport; IEA:UniProtKB-KW.
DR InterPro; IPR002128; NADH_UbQ_OxRdtase_chlpt_su5_C.
DR InterPro; IPR003945; NADHpl_OxRdtase_5.
DR InterPro; IPR018393; NADHpl_OxRdtase_5_subgr.
DR InterPro; IPR001750; ND/Mrp_mem.
DR InterPro; IPR001516; Proton_antipo_N.
DR Pfam; PF01010; Proton_antipo_C; 1.
DR Pfam; PF00361; Proton_antipo_M; 1.
DR Pfam; PF00662; Proton_antipo_N; 1.
DR PRINTS; PR01435; NPOXDRDTASE5.
DR TIGRFAMs; TIGR01974; NDH_I_L; 1.
PE 3: Inferred from homology;
KW Chloroplast; Complete proteome; Membrane; NAD; NADP; Oxidoreductase;
KW Plastid; Plastoquinone; Quinone; Reference proteome; Thylakoid;
KW Transmembrane; Transmembrane helix; Transport.
FT CHAIN 1 746 NAD(P)H-quinone oxidoreductase subunit 5,
FT chloroplastic.
FT /FTId=PRO_0000118169.
FT TRANSMEM 9 29 Helical. {ECO:0000255}.
FT TRANSMEM 40 60 Helical. {ECO:0000255}.
FT TRANSMEM 89 109 Helical. {ECO:0000255}.
FT TRANSMEM 125 145 Helical. {ECO:0000255}.
FT TRANSMEM 147 167 Helical. {ECO:0000255}.
FT TRANSMEM 185 205 Helical. {ECO:0000255}.
FT TRANSMEM 221 241 Helical. {ECO:0000255}.
FT TRANSMEM 258 278 Helical. {ECO:0000255}.
FT TRANSMEM 280 300 Helical. {ECO:0000255}.
FT TRANSMEM 327 347 Helical. {ECO:0000255}.
FT TRANSMEM 354 374 Helical. {ECO:0000255}.
FT TRANSMEM 396 416 Helical. {ECO:0000255}.
FT TRANSMEM 425 445 Helical. {ECO:0000255}.
FT TRANSMEM 547 567 Helical. {ECO:0000255}.
FT TRANSMEM 608 628 Helical. {ECO:0000255}.
FT TRANSMEM 723 743 Helical. {ECO:0000255}.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 141 442 ipfam:Proton_antipo_M [T]
FT MYHIT 448 690 ipfam:Proton_antipo_C [T]
FT MYHIT 72 128 ipfam:Proton_antipo_N [T]
SQ SEQUENCE 746 AA; 85239 MW; 1391A7875E9E7A29 CRC64;
MEHTYQYSWI IPFIPLPVPI LLGVGLLLFP TATKNLRRMW TFLSIFLLSI VMIFSIYLSI
QQIFLSCIHQ NVWSWTINNE FSFEFGYFID PLTSIMSILI TTVGILVLIY SDNYMSHDQG
YLRFFAYMGF FNTSMLGLVT SSNLIQVYFF WELVGMCSYL LIGFWFTRPI AANACQKAFV
TNRVGDFGLL LGILGLYWIT GSFEFQDLFE IFNNLILNNR VNLLFLTLCA FLLFVGPIAK
SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFIVIPSI MYIISLIGII
TVLLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS
GSIIHSMEAI VGYSPDKSQN MILMGGLTKH VPITKTAFLI GTLSLCGIPP LACFWSKDEI
LNDSLLFSPI FAIIACSTAG LTAFYMFRIY LLTFEGHLNT YFLNYSGKKS GSFYSLSLWG
KEEEKKLNKN FGLVPLLTMN NTKRASFFCN KTYKISNNVR NQIFITVENF GLNTRTFYYP
HESDNTILFP MLILVLFTLF IGAIGIPFNQ EGIDFDILSK FFTPSINLLH KNSQNFVDWY
EFLRNATFSV SIAFFGIFIA YCLYKPFYSS LLNLTLLNSF QKWNSKRIHW EKLINFVYNW
SYNRGYIDSF FKTSLIESIR RLAKQTTFFD KRIIDGITNG VGITSFFVGE VTKYIGGSRI
SSYLFLYLSY VLIFLMILFF FYFEKF
//
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