MyHits has reached its end of life and no longer provides data or services. Thank you for your support and trust for more than 23 years!
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
- MyHits
| Description | RecName: Full=Outer membrane transporter protein IbpB; AltName: Full=TpsB transporter; Flags: Precursor; |
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| MyHits synonyms | IBPB_HISS2 , B0UUL1 , Q7WZI4 , 685AE659241C59EC |
 Legends: 1, SIGNAL {ECO:0000255}; 2, POTRA. {ECO:0000255|PROSITE- ProRule:PRU01115}; 3, ipfam:POTRA_2 [T].
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ID IBPB_HISS2 Reviewed; 586 AA.
AC B0UUL1; Q7WZI4;
DT 10-JUN-2008, integrated into UniProtKB/Swiss-Prot.
DT 08-APR-2008, sequence version 1.
DT 02-NOV-2016, entry version 48.
DE RecName: Full=Outer membrane transporter protein IbpB;
DE AltName: Full=TpsB transporter;
DE Flags: Precursor;
GN Name=ibpB; OrderedLocusNames=HSM_1490;
OS Histophilus somni (strain 2336) (Haemophilus somnus).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales;
OC Pasteurellaceae; Histophilus.
OX NCBI_TaxID=228400;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND FUNCTION.
RX PubMed=16169703; DOI=10.1016/j.micpath.2005.08.002;
RA Tagawa Y., Sanders J.D., Uchida I., Bastida-Corcuera F.D.,
RA Kawashima K., Corbeil L.B.;
RT "Genetic and functional analysis of Haemophilus somnus high molecular
RT weight-immunoglobulin binding proteins.";
RL Microb. Pathog. 39:159-170(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=2336;
RG US DOE Joint Genome Institute;
RA Siddaramappa S., Duncan A.J., Challacombe J.F., Rainey D.,
RA Gillaspy A.F., Carson M., Gipson J., Gipson M., Bruce D., Detter J.C.,
RA Han C.S., Land M., Tapia R., Thompson L.S., Orvis J., Zaitshik J.,
RA Barnes G., Brettin T.S., Dyer D.W., Inzana T.J.;
RT "Complete sequence of Haemophilus somnus 2336.";
RL Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Possible member (with IbpA) of a two partner secretion
CC pathway (TPS) in which it would mediate the secretion of protein
CC IbpA (high molecular weight immunoglobulin-binding protein).
CC {ECO:0000269|PubMed:16169703}.
CC -!- SUBCELLULAR LOCATION: Cell outer membrane {ECO:0000250}.
CC -!- DOMAIN: Probably a beta-barrel protein. {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the TPS (TC 1.B.20) family. {ECO:0000305}.
CC -!- SIMILARITY: Contains 1 POTRA domain. {ECO:0000255|PROSITE-
CC ProRule:PRU01115}.
DR EMBL; AB087258; BAC78648.1; -; Genomic_DNA.
DR EMBL; CP000947; ACA31241.1; -; Genomic_DNA.
DR ProteinModelPortal; B0UUL1; -.
DR EnsemblBacteria; ACA31241; ACA31241; HSM_1490.
DR KEGG; hsm:HSM_1490; -.
DR PATRIC; 20200202; VBIHaeSom93646_1570.
DR HOGENOM; HOG000112992; -.
DR KO; K07326; -.
DR OMA; GTNDRWS; -.
DR OrthoDB; POG091H0LK7; -.
DR Proteomes; UP000008543; Chromosome.
DR GO; GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0046930; C:pore complex; IEA:UniProtKB-KW.
DR GO; GO:0015288; F:porin activity; IEA:UniProtKB-KW.
DR GO; GO:0006811; P:ion transport; IEA:UniProtKB-KW.
DR GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW.
DR InterPro; IPR005565; Hemolysn_activator_HlyB.
DR InterPro; IPR013686; Polypept-transport_assoc_ShlB.
DR InterPro; IPR027282; TPS.
DR Pfam; PF08479; POTRA_2; 1.
DR Pfam; PF03865; ShlB; 1.
DR PIRSF; PIRSF029745; FhaC; 1.
DR PROSITE; PS51779; POTRA; 1.
PE 3: Inferred from homology;
KW Cell outer membrane; Complete proteome; Ion transport; Membrane;
KW Porin; Protein transport; Reference proteome; Signal; Transmembrane;
KW Transmembrane beta strand; Transport.
FT SIGNAL 1 30 {ECO:0000255}.
FT CHAIN 31 586 Outer membrane transporter protein IbpB.
FT /FTId=PRO_5000311092.
FT DOMAIN 97 172 POTRA. {ECO:0000255|PROSITE-
FT ProRule:PRU01115}.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 103 172 ipfam:POTRA_2 [T]
FT MYHIT 97 172 iprf:POTRA [T]
FT MYHIT 235 547 ipfam:ShlB [T]
SQ SEQUENCE 586 AA; 66386 MW; 685AE659241C59EC CRC64;
MPKYKYNKIN ILFSCCLLVS FVVAPLVVQA QEDPLVTQAR EAAKEAKPLV QELLHLKNQQ
QFEKVEQNFE KAQRFLEDNR PNQEQIVEQL KSAKDVQTIT KITIDFGGEE IFLDFDEVTK
HYLNQPLSAK TVFALTKELT QVLYNAGYVT SAIGLKSSKI KNGEVEFVVL WGKVNDILVE
EQQASLFKDK AMLFVLPNLK GKVLRIYDVD QLIEILNTGN KTAKVNVIAA NEKSMSNLSI
ERHRTSYPQV SLSLNNSGEG SNAEGRNQAT LSISWSDLLG TNDRWSFSTG YRIYKDRQAN
RQQNYSLSYT QPFSFSTLDI KLSYSGYKKQ LRGIHTHGSS GETKQASFKL SHTLLRNKDM
ILSLYGELEF KRRLSYFGDI RIGKYHNNKL NIGLSYVTNL GHGKLYSDLS YSNGLRWFNA
NHSAYNSHRD KTLRLVSGSI NWQRPFVFFN RGMSYQFRLG AQYGFDSLYG ENQFSIGDEY
TVRGFKGGAG SGDRGFYISQ TVTIPFYPQK SYLSYINPFL GIDIGKVHAK RPHHVVDTFA
GFAFGVKAQI KSLALSLTYA KPINGVGTFE ESNKKSVFYF TGSVSF
//
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