Entry sw:CRPM1_ARATH

ID   CRPM1_ARATH             Reviewed;         197 AA.
AC   Q9XIM7;
DT   28-NOV-2012, integrated into UniProtKB/Swiss-Prot.
DT   01-NOV-1999, sequence version 1.
DT   30-NOV-2016, entry version 90.
DE   RecName: Full=Cold-regulated 413 plasma membrane protein 1;
DE            Short=AtCOR413-PM1;
DE   AltName: Full=WCOR413-like protein;
GN   Name=COR413PM1; Synonyms=FL3-5A3; OrderedLocusNames=At2g15970;
GN   ORFNames=F19G14.3;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
OC   Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
OC   Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA], INDUCTION BY ABSCISIC ACID; FREEZING AND
RP   DROUGHT, GENE FAMILY, AND NOMENCLATURE.
RC   STRAIN=cv. Columbia;
RX   PubMed=12746512; DOI=10.1104/pp.102.015255;
RA   Breton G., Danyluk J., Charron J.-B.F., Sarhan F.;
RT   "Expression profiling and bioinformatic analyses of a novel stress-
RT   regulated multispanning transmembrane protein family from cereals and
RT   Arabidopsis.";
RL   Plant Physiol. 132:64-74(2003).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=10617197; DOI=10.1038/45471;
RA   Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA   Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA   Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L.,
RA   Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L.,
RA   Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H.,
RA   Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D.,
RA   Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M.,
RA   Venter J.C.;
RT   "Sequence and analysis of chromosome 2 of the plant Arabidopsis
RT   thaliana.";
RL   Nature 402:761-768(1999).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RG   The Arabidopsis Information Resource (TAIR);
RL   Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases.
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11910074; DOI=10.1126/science.1071006;
RA   Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA   Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M.,
RA   Hayashizaki Y., Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T.,
RA   Shibata K., Shinagawa A., Shinozaki K.;
RT   "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL   Science 296:141-145(2002).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=14593172; DOI=10.1126/science.1088305;
RA   Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
RA   Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
RA   Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
RA   Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
RA   Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
RA   Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
RA   Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
RA   Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
RA   Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
RA   Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
RA   Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
RA   Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   "Empirical analysis of transcriptional activity in the Arabidopsis
RT   genome.";
RL   Science 302:842-846(2003).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA   Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA   Feldmann K.A.;
RT   "Full-length cDNA from Arabidopsis thaliana.";
RL   Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN   [7]
RP   SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
RX   PubMed=15574830; DOI=10.1093/pcp/pch209;
RA   Alexandersson E., Saalbach G., Larsson C., Kjellbom P.;
RT   "Arabidopsis plasma membrane proteomics identifies components of
RT   transport, signal transduction and membrane trafficking.";
RL   Plant Cell Physiol. 45:1543-1556(2004).
RN   [8]
RP   INDUCTION BY ABSCISIC ACID.
RX   PubMed=15772289; DOI=10.1105/tpc.104.027474;
RA   Osakabe Y., Maruyama K., Seki M., Satou M., Shinozaki K.,
RA   Yamaguchi-Shinozaki K.;
RT   "Leucine-rich repeat receptor-like kinase1 is a key membrane-bound
RT   regulator of abscisic acid early signaling in Arabidopsis.";
RL   Plant Cell 17:1105-1119(2005).
CC   -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000269|PubMed:15574830};
CC       Multi-pass membrane protein {ECO:0000269|PubMed:15574830}.
CC   -!- ALTERNATIVE PRODUCTS:
CC       Event=Alternative splicing; Named isoforms=1;
CC         Comment=Additional isoforms seem to exist.;
CC       Name=1;
CC         IsoId=Q9XIM7-1; Sequence=Displayed;
CC   -!- INDUCTION: Accumulates in response to abscisic acid (ABA),
CC       freezing and drought treatments. {ECO:0000269|PubMed:12746512,
CC       ECO:0000269|PubMed:15772289}.
CC   -!- SIMILARITY: Belongs to the Cold-regulated 413 protein family.
CC       {ECO:0000305}.
DR   EMBL; AF283004; AAG13393.1; -; mRNA.
DR   EMBL; AC006438; AAD41971.1; -; Genomic_DNA.
DR   EMBL; CP002685; AEC06451.1; -; Genomic_DNA.
DR   EMBL; AB044404; BAB17682.1; -; mRNA.
DR   EMBL; AY093767; AAM10389.1; -; mRNA.
DR   EMBL; AY143813; AAN28752.1; -; mRNA.
DR   EMBL; AY088558; AAM66090.1; -; mRNA.
DR   PIR; C84535; C84535.
DR   RefSeq; NP_179196.1; NM_127156.4. [Q9XIM7-1]
DR   UniGene; At.22305; -.
DR   UniGene; At.24347; -.
DR   ProteinModelPortal; Q9XIM7; -.
DR   BioGrid; 1451; 26.
DR   STRING; 3702.AT2G15970.1; -.
DR   PaxDb; Q9XIM7; -.
DR   EnsemblPlants; AT2G15970.1; AT2G15970.1; AT2G15970. [Q9XIM7-1]
DR   GeneID; 816092; -.
DR   Gramene; AT2G15970.1; AT2G15970.1; AT2G15970.
DR   KEGG; ath:AT2G15970; -.
DR   TAIR; AT2G15970; -.
DR   eggNOG; ENOG410IVQJ; Eukaryota.
DR   eggNOG; ENOG4111SCF; LUCA.
DR   HOGENOM; HOG000239742; -.
DR   InParanoid; Q9XIM7; -.
DR   OMA; WIGLAIC; -.
DR   OrthoDB; EOG09360RWR; -.
DR   PhylomeDB; Q9XIM7; -.
DR   PRO; PR:Q9XIM7; -.
DR   Proteomes; UP000006548; Chromosome 2.
DR   ExpressionAtlas; Q9XIM7; baseline and differential.
DR   Genevisible; Q9XIM7; AT.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   GO; GO:0005886; C:plasma membrane; ISS:TAIR.
DR   GO; GO:0005773; C:vacuole; IDA:TAIR.
DR   GO; GO:0042631; P:cellular response to water deprivation; IEP:TAIR.
DR   GO; GO:0009631; P:cold acclimation; IEP:TAIR.
DR   GO; GO:0009737; P:response to abscisic acid; IEP:TAIR.
DR   InterPro; IPR008892; COR413.
DR   Pfam; PF05562; WCOR413; 1.
PE   2: Evidence at transcript level;
KW   Alternative splicing; Cell membrane; Complete proteome; Membrane;
KW   Reference proteome; Transmembrane; Transmembrane helix.
FT   CHAIN         1    197       Cold-regulated 413 plasma membrane
FT                                protein 1.
FT                                /FTId=PRO_0000420440.
FT   TOPO_DOM      1     40       Extracellular. {ECO:0000255}.
FT   TRANSMEM     41     61       Helical. {ECO:0000255}.
FT   TOPO_DOM     62     71       Cytoplasmic. {ECO:0000255}.
FT   TRANSMEM     72     92       Helical. {ECO:0000255}.
FT   TOPO_DOM     93     94       Extracellular. {ECO:0000255}.
FT   TRANSMEM     95    115       Helical. {ECO:0000255}.
FT   TOPO_DOM    116    117       Cytoplasmic. {ECO:0000255}.
FT   TRANSMEM    118    138       Helical. {ECO:0000255}.
FT   TOPO_DOM    139    141       Extracellular. {ECO:0000255}.
FT   TRANSMEM    142    162       Helical. {ECO:0000255}.
FT   TOPO_DOM    163    176       Cytoplasmic. {ECO:0000255}.
FT   TRANSMEM    177    197       Helical. {ECO:0000255}.
CC   --------------------------------------------------------------------------
CC   The following FT lines are automated annotations from the MyHits database.
CC   --------------------------------------------------------------------------
FT   MYHIT        13    187       ipfam:WCOR413 [T]
SQ   SEQUENCE   197 AA;  21605 MW;  CEF88C89FC6EAE3D CRC64;
     MPMKSLRNDH GTLKAMIGSD FNELTIAAKN LATHAFTLTG LGFGTSVLEW VASIAAIYLL
     VLDRTNWKTN MLTSLLIPYI FFSLPSLIFG IFRGEIGKWI AFVAVVVQLF FPKHAREYLE
     LPVALVLLAV VAPNLIAGTF RDSWIGLAIC LGIGCYLLQE HIRASGGFRN AFTKANGISN
     TVGIICLVVF PVWALIF
//