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Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7

DescriptionRecName: Full=Transcription factor bHLH139; AltName: Full=Basic helix-loop-helix protein 139; Short=AtbHLH139; Short=bHLH 139; AltName: Full=Transcription factor EN 116; AltName: Full=bHLH transcription factor bHLH139;
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MyHits synonymsBH139_ARATH , Q3E7L7 , 092AB779C68B79FD
match map segment
ipfam:HLH iprf:BHLH ismart:HLH  
Legends: 1, bHLH. {ECO:0000255|PROSITE- ProRule:PRU00981}. 
ID   BH139_ARATH             Reviewed;         223 AA.
AC   Q3E7L7;
DT   16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT   08-NOV-2005, sequence version 1.
DT   02-NOV-2016, entry version 74.
DE   RecName: Full=Transcription factor bHLH139;
DE   AltName: Full=Basic helix-loop-helix protein 139;
DE            Short=AtbHLH139;
DE            Short=bHLH 139;
DE   AltName: Full=Transcription factor EN 116;
DE   AltName: Full=bHLH transcription factor bHLH139;
GN   Name=BHLH139; Synonyms=EN116; OrderedLocusNames=At5g43175;
GN   ORFNames=MMG4;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
OC   Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
OC   Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=9501997; DOI=10.1093/dnares/4.6.401;
RA   Nakamura Y., Sato S., Kaneko T., Kotani H., Asamizu E., Miyajima N.,
RA   Tabata S.;
RT   "Structural analysis of Arabidopsis thaliana chromosome 5. III.
RT   Sequence features of the regions of 1,191,918 bp covered by seventeen
RT   physically assigned P1 clones.";
RL   DNA Res. 4:401-414(1997).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RG   The Arabidopsis Information Resource (TAIR);
RL   Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases.
RN   [3]
RP   GENE FAMILY, AND NOMENCLATURE.
RX   PubMed=12897250; DOI=10.1105/tpc.013839;
RA   Toledo-Ortiz G., Huq E., Quail P.H.;
RT   "The Arabidopsis basic/helix-loop-helix transcription factor family.";
RL   Plant Cell 15:1749-1770(2003).
CC   -!- SUBUNIT: Homodimer. {ECO:0000305}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
CC       ProRule:PRU00981}.
CC   -!- SIMILARITY: Contains 1 bHLH (basic helix-loop-helix) domain.
CC       {ECO:0000255|PROSITE-ProRule:PRU00981}.
DR   EMBL; AB008267; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; CP002688; AED94919.1; -; Genomic_DNA.
DR   RefSeq; NP_680385.1; NM_148080.2.
DR   UniGene; At.55333; -.
DR   ProteinModelPortal; Q3E7L7; -.
DR   BioGrid; 19585; 2.
DR   STRING; 3702.AT5G43175.1; -.
DR   PaxDb; Q3E7L7; -.
DR   EnsemblPlants; AT5G43175.1; AT5G43175.1; AT5G43175.
DR   GeneID; 834335; -.
DR   Gramene; AT5G43175.1; AT5G43175.1; AT5G43175.
DR   KEGG; ath:AT5G43175; -.
DR   TAIR; AT5G43175; -.
DR   eggNOG; ENOG410IXZ6; Eukaryota.
DR   eggNOG; ENOG410YM1P; LUCA.
DR   HOGENOM; HOG000240244; -.
DR   InParanoid; Q3E7L7; -.
DR   OMA; MENEAFV; -.
DR   OrthoDB; EOG093603GY; -.
DR   PhylomeDB; Q3E7L7; -.
DR   PRO; PR:Q3E7L7; -.
DR   Proteomes; UP000006548; Chromosome 5.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0001046; F:core promoter sequence-specific DNA binding; IBA:GO_Central.
DR   GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR.
DR   GO; GO:0001228; F:transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding; IBA:GO_Central.
DR   GO; GO:0006366; P:transcription from RNA polymerase II promoter; IBA:GO_Central.
DR   Gene3D; 4.10.280.10; -; 1.
DR   InterPro; IPR011598; bHLH_dom.
DR   Pfam; PF00010; HLH; 1.
DR   SMART; SM00353; HLH; 1.
DR   SUPFAM; SSF47459; SSF47459; 1.
DR   PROSITE; PS50888; BHLH; 1.
PE   3: Inferred from homology;
KW   Complete proteome; DNA-binding; Nucleus; Reference proteome;
KW   Transcription; Transcription regulation.
FT   CHAIN         1    223       Transcription factor bHLH139.
FT                                /FTId=PRO_0000358819.
FT   DOMAIN      138    187       bHLH. {ECO:0000255|PROSITE-
FT                                ProRule:PRU00981}.
CC   --------------------------------------------------------------------------
CC   The following FT lines are automated annotations from the MyHits database.
CC   --------------------------------------------------------------------------
FT   MYHIT       148    188       ipfam:HLH [T]
FT   MYHIT       138    187       iprf:BHLH [T]
FT   MYHIT       144    193       ismart:HLH [T]
SQ   SEQUENCE   223 AA;  25076 MW;  092AB779C68B79FD CRC64;
     MENEAFVDGE LESLLGMFNF DQCSSNESSF CNAPNETDVF SSDDFFPFGT ILQSNYAAVL
     DGSNHQTNRN VDSRQDLLKP RKKQKLSSES NLVTEPKTAW RDGQSLSSYN SSDDEKALGL
     VSNTSKSLKR KAKANRGIAS DPQSLYARKR RERINDRLKT LQSLVPNGTK VDISTMLEDA
     VHYVKFLQLQ IKLLSSEDLW MYAPLAHNGL NMGLHHNLLS RLI
//