MyHits has reached its end of life and no longer provides data or services. Thank you for your support and trust for more than 23 years!
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
- MyHits
| Description | RecName: Full=APO protein 2, chloroplastic; AltName: Full=Accumulation of photosystem I protein 2; AltName: Full=Protein EMBRYO DEFECTIVE 1629; Flags: Precursor; |
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| MyHits synonyms | APO2_ARATH , Q8W4A5 , Q94JR8 , Q9FJM2 , AF686442C417D840 |
 Legends: 1, TRANSIT Chloroplast. {ECO:0000255}; 2, APO 1. {ECO:0000255|PROSITE- ProRule:PRU00832}; 3, APO 2. {ECO:0000255|PROSITE- ProRule:PRU00832}; 4, VAR_SEQ SF -> SSSTV (in isoform 2). {ECO:0000305}.
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ID APO2_ARATH Reviewed; 440 AA.
AC Q8W4A5; Q94JR8; Q9FJM2;
DT 05-JUL-2005, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2002, sequence version 1.
DT 30-NOV-2016, entry version 85.
DE RecName: Full=APO protein 2, chloroplastic;
DE AltName: Full=Accumulation of photosystem I protein 2;
DE AltName: Full=Protein EMBRYO DEFECTIVE 1629;
DE Flags: Precursor;
GN Name=APO2; Synonyms=EMB1629; OrderedLocusNames=At5g57930;
GN ORFNames=MTI20.19;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
OC Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9734815; DOI=10.1093/dnares/5.3.203;
RA Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VI.
RT Sequence features of the regions of 1,367,185 bp covered by 19
RT physically assigned P1 and TAC clones.";
RL DNA Res. 5:203-216(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RG The Arabidopsis Information Resource (TAIR);
RL Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), AND NUCLEOTIDE
RP SEQUENCE OF 1-250 (ISOFORM 2).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
CC -!- FUNCTION: May be involved in the stable assembly of several 4Fe-4S
CC cluster-containing complexes of chloroplasts. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q8W4A5-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q8W4A5-2; Sequence=VSP_014479;
CC Note=No experimental confirmation available.;
CC -!- DOMAIN: The APO repeats may provide ligands for 4Fe-4S centers.
CC {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the APO family. {ECO:0000255|PROSITE-
CC ProRule:PRU00832}.
CC -!- SIMILARITY: Contains 2 APO domains. {ECO:0000255|PROSITE-
CC ProRule:PRU00832}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB08863.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
DR EMBL; AB013396; BAB08863.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED96972.1; -; Genomic_DNA.
DR EMBL; CP002688; AED96973.1; -; Genomic_DNA.
DR EMBL; AF375421; AAK53005.1; -; mRNA.
DR EMBL; AY062701; AAL32779.1; -; mRNA.
DR EMBL; AY114672; AAM47991.1; -; mRNA.
DR RefSeq; NP_200601.3; NM_125178.6. [Q8W4A5-2]
DR RefSeq; NP_851208.1; NM_180877.2. [Q8W4A5-1]
DR UniGene; At.27440; -.
DR ProteinModelPortal; Q8W4A5; -.
DR SMR; Q8W4A5; -.
DR STRING; 3702.AT5G57930.2; -.
DR PaxDb; Q8W4A5; -.
DR EnsemblPlants; AT5G57930.1; AT5G57930.1; AT5G57930. [Q8W4A5-1]
DR GeneID; 835904; -.
DR Gramene; AT5G57930.1; AT5G57930.1; AT5G57930.
DR KEGG; ath:AT5G57930; -.
DR TAIR; AT5G57930; -.
DR eggNOG; ENOG410IEP8; Eukaryota.
DR eggNOG; ENOG410XP6U; LUCA.
DR HOGENOM; HOG000239455; -.
DR InParanoid; Q8W4A5; -.
DR OMA; RSFYGQA; -.
DR PhylomeDB; Q8W4A5; -.
DR PRO; PR:Q8W4A5; -.
DR Proteomes; UP000006548; Chromosome 5.
DR Genevisible; Q8W4A5; AT.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR InterPro; IPR023342; APO_dom.
DR Pfam; PF05634; APO_RNA-bind; 2.
DR PROSITE; PS51499; APO; 2.
PE 2: Evidence at transcript level;
KW Alternative splicing; Chloroplast; Complete proteome; Plastid;
KW Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1 62 Chloroplast. {ECO:0000255}.
FT CHAIN 63 440 APO protein 2, chloroplastic.
FT /FTId=PRO_0000001931.
FT DOMAIN 162 247 APO 1. {ECO:0000255|PROSITE-
FT ProRule:PRU00832}.
FT DOMAIN 332 417 APO 2. {ECO:0000255|PROSITE-
FT ProRule:PRU00832}.
FT VAR_SEQ 9 10 SF -> SSSTV (in isoform 2).
FT {ECO:0000305}.
FT /FTId=VSP_014479.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 302 418 ipfam:APO_RNA-bind [T]
FT MYHIT 71 267 ipfam:APO_RNA-bind [T]
FT MYHIT 162 247 iprf:APO [T]
FT MYHIT 332 417 iprf:APO [T]
SQ SEQUENCE 440 AA; 49938 MW; AF686442C417D840 CRC64;
MSITYSAISF SGFSPKSVPF AIHSVTRRQF LNPNTFYRFG FSPSLQGSSI EFSLQLNSRV
VLSKERRSLP LVVRNDRPQN EDLPKQYTRR EKKPFPVPIV DLRRAARERV KNNKDKPKRP
LPPPKNGMVV KSLVPLAYKV YNARIRLINN LHRLMKVVRV NACGWCNEIH VGPYGHPFKS
CKGPNTSQRK GLHEWTNSVI EDVIVPLEAY HLFDRLGKRI RHDERFSIPR VPAVVELCIQ
GGVEIPEFPA KRRRKPIIRI GKSEFVDADE TELPDPEPQP PPVPLLTELP VSEITPPSSE
EETVSLAEET LQAWEEMRAG AKKLMRMYRV RVCGYCPEVH VGPTGHKAQN CGAFKHQQRN
GQHGWQSAVL DDLIPPRYVW HVPDVNGPPM QRELRSFYGQ APAVVEICAQ AGAVVPEHYR
ATMRLEVGIP SSVKEAEMVV
//
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