ID X1WE00_DANRE Unreviewed; 552 AA.
AC X1WE00;
DT 14-MAY-2014, integrated into UniProtKB/TrEMBL.
DT 14-MAY-2014, sequence version 1.
DT 10-MAY-2017, entry version 24.
DE SubName: Full=Zinc finger protein 1013 {ECO:0000313|Ensembl:ENSDARP00000128451};
DE Flags: Fragment;
GN Name=znf1013 {ECO:0000313|Ensembl:ENSDARP00000128451,
GN ECO:0000313|ZFIN:ZDB-GENE-131126-19};
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Cyprinidae; Danio.
OX NCBI_TaxID=7955 {ECO:0000313|Ensembl:ENSDARP00000128451, ECO:0000313|Proteomes:UP000000437};
RN [1] {ECO:0000313|Ensembl:ENSDARP00000128451, ECO:0000313|Proteomes:UP000000437}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000128451,
RC ECO:0000313|Proteomes:UP000000437};
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
RA Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
RA McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
RA Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
RA Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
RA Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
RA Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
RA Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
RA Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
RA Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
RA Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
RA Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
RA Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
RA Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
RA Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA Saunders D., Wallis J., Babbage A., Hammond S.,
RA Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
RA Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
RA Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
RA Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
RA Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
RA Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
RA Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
RA Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
RA Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
RA Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
RA Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the
RT human genome.";
RL Nature 496:498-503(2013).
RN [2] {ECO:0000313|Ensembl:ENSDARP00000128451}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000128451};
RG Ensembl;
RL Submitted (MAR-2014) to UniProtKB.
CC -!- CAUTION: The sequence shown here is derived from an Ensembl
CC automatic analysis pipeline and should be considered as
CC preliminary data. {ECO:0000313|Ensembl:ENSDARP00000128451}.
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DR EMBL; BX248582; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR ProteinModelPortal; X1WE00; -.
DR Ensembl; ENSDART00000157162; ENSDARP00000128451; ENSDARG00000092507.
DR ZFIN; ZDB-GENE-131126-19; znf1013.
DR GeneTree; ENSGT00870000136638; -.
DR Proteomes; UP000000437; Chromosome 15.
DR ExpressionAtlas; X1WE00; baseline.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR Gene3D; 3.30.40.10; -; 1.
DR InterPro; IPR013087; Znf_C2H2_type.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR SMART; SM00355; ZnF_C2H2; 16.
DR SUPFAM; SSF57667; SSF57667; 9.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 16.
DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 16.
PE 4: Predicted;
KW Complete proteome {ECO:0000313|Proteomes:UP000000437};
KW Reference proteome {ECO:0000313|Proteomes:UP000000437}.
FT DOMAIN 96 123 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 124 151 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 152 179 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 180 207 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 208 235 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 236 263 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 264 291 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 292 319 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 320 347 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 348 375 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 376 403 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 404 431 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 432 459 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 460 487 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 488 515 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 516 543 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT NON_TER 1 1 {ECO:0000313|Ensembl:ENSDARP00000128451}.
FT NON_TER 552 552 {ECO:0000313|Ensembl:ENSDARP00000128451}.
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CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 432 454 ismart:ZnF_C2H2 [T]
FT MYHIT 320 342 ismart:ZnF_C2H2 [T]
FT MYHIT 434 454 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 404 426 ismart:ZnF_C2H2 [T]
FT MYHIT 266 286 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 378 398 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 152 174 ismart:ZnF_C2H2 [T]
FT MYHIT 124 151 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 208 230 ismart:ZnF_C2H2 [T]
FT MYHIT 460 482 ismart:ZnF_C2H2 [T]
FT MYHIT 348 370 ismart:ZnF_C2H2 [T]
FT MYHIT 488 515 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 348 375 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 208 235 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 518 538 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 406 426 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 264 286 ismart:ZnF_C2H2 [T]
FT MYHIT 180 202 ismart:ZnF_C2H2 [T]
FT MYHIT 432 459 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 152 179 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 154 174 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 236 263 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 488 510 ismart:ZnF_C2H2 [T]
FT MYHIT 294 314 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 490 510 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 350 370 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 516 543 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 124 146 ismart:ZnF_C2H2 [T]
FT MYHIT 376 403 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 264 291 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 182 202 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 322 342 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 210 230 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 96 123 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 516 538 ismart:ZnF_C2H2 [T]
FT MYHIT 126 146 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 320 347 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 292 319 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 98 118 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 238 258 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 462 482 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 460 487 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 376 398 ismart:ZnF_C2H2 [T]
FT MYHIT 96 118 ismart:ZnF_C2H2 [T]
FT MYHIT 404 431 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 236 258 ismart:ZnF_C2H2 [T]
FT MYHIT 180 207 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 292 314 ismart:ZnF_C2H2 [T]
SQ SEQUENCE 552 AA; 62950 MW; CB2651056EC95831 CRC64;
XVSKHKEQQI IIKMAFVKEE SEDVKIDETF AVKHEDPEEQ KDLTKLKEES QELDKVEEED
HISAEEHELL TGGKSEHAEK KSSRKRSKKL FFNKSFTCHQ CGKSFTQKQD MKVHMRVHTG
EKPFACQQCG QGFTQKGNLS AHMRAHNGEK PFTCTQCGQG FTRKEILNGH MRIHTGEKPF
TCQQCGQSFT QRGNLIAHMR VHTGEKPYIC TKCGQSFTQK GNLNSHMRRH SGEKPHTCSQ
CGQSFTRKEV LTSHMRIHTG EKPYTCTECG RSFAQKGNYN THMRGHRGEK PHTCTQCGRG
FTRNEVLIAH MRVHTGEKPF TCQQCGQSFT QRGNLEGHMR SHGAEKPFVC TQCGQSFTQK
GNLNAHMRAH NGDKPFTCSE CGQNFTRKEI LASHMRIHTG EKPYTCAHCG QRFRQRGNLT
AHLRIHNGDK PFACTQCEQS FTRKEILNAH IRVHTGEKPF TCQQCGQSFT QKGNLNSHMR
CHNGDKPFAC SHCERSFSRK ETLDGHMRVH TGEKPFVCQQ CGQSFKLQGN LRVHTRCHNG
EKPFACTQCE RS
//
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