ID RK13_ARATH Reviewed; 241 AA.
AC Q9SYL9;
DT 19-SEP-2006, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 12-APR-2017, entry version 113.
DE RecName: Full=50S ribosomal protein L13, chloroplastic;
DE AltName: Full=CL13;
DE AltName: Full=Protein EMBRYO DEFECTIVE 1473;
DE Flags: Precursor;
GN Name=RPL13; Synonyms=EMB1473; OrderedLocusNames=At1g78630;
GN ORFNames=T30F21.4;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
OC Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Landsberg erecta;
RA Kavousi M., Subramanian A.R.;
RT "Three introns are added at the organelle to nucleus of the gene for
RT chloroplast ribosomal protein L13.";
RL Submitted (MAY-1995) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S.,
RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y.,
RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W.,
RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K.,
RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y.,
RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L.,
RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E.,
RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B.,
RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P.,
RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A.,
RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I.,
RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D.,
RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M.,
RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M.,
RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis
RT thaliana.";
RL Nature 408:816-820(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RG The Arabidopsis Information Portal (Araport);
RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
RA Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
RA Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
RA Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
RA Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
RA Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
RA Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
RA Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
RA Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
RA Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
RA Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
RA Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL13
CC family. {ECO:0000305}.
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DR EMBL; X87333; CAA60775.1; -; Genomic_DNA.
DR EMBL; AC007260; AAD30573.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE36130.1; -; Genomic_DNA.
DR EMBL; AY063105; AAL34279.1; -; mRNA.
DR EMBL; AF370318; AAK44133.1; -; mRNA.
DR PIR; A96815; A96815.
DR RefSeq; NP_177984.1; NM_106510.3.
DR UniGene; At.20962; -.
DR ProteinModelPortal; Q9SYL9; -.
DR SMR; Q9SYL9; -.
DR BioGrid; 29418; 5.
DR STRING; 3702.AT1G78630.1; -.
DR PaxDb; Q9SYL9; -.
DR PRIDE; Q9SYL9; -.
DR EnsemblPlants; AT1G78630.1; AT1G78630.1; AT1G78630.
DR GeneID; 844199; -.
DR Gramene; AT1G78630.1; AT1G78630.1; AT1G78630.
DR KEGG; ath:AT1G78630; -.
DR Araport; AT1G78630; -.
DR TAIR; locus:2203010; AT1G78630.
DR eggNOG; KOG3203; Eukaryota.
DR eggNOG; COG0102; LUCA.
DR HOGENOM; HOG000225286; -.
DR InParanoid; Q9SYL9; -.
DR KO; K02871; -.
DR OMA; DKRIQKT; -.
DR OrthoDB; EOG09360KID; -.
DR PhylomeDB; Q9SYL9; -.
DR PRO; PR:Q9SYL9; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SYL9; baseline and differential.
DR Genevisible; Q9SYL9; AT.
DR GO; GO:0009507; C:chloroplast; IDA:TAIR.
DR GO; GO:0009941; C:chloroplast envelope; IDA:TAIR.
DR GO; GO:0009570; C:chloroplast stroma; IDA:TAIR.
DR GO; GO:0005840; C:ribosome; IBA:GO_Central.
DR GO; GO:0009579; C:thylakoid; IDA:TAIR.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
DR GO; GO:0009735; P:response to cytokinin; IDA:TAIR.
DR GO; GO:0006412; P:translation; IBA:GO_Central.
DR CDD; cd00392; Ribosomal_L13; 1.
DR Gene3D; 3.90.1180.10; -; 1.
DR HAMAP; MF_01366; Ribosomal_L13; 1.
DR InterPro; IPR005822; Ribosomal_L13.
DR InterPro; IPR005823; Ribosomal_L13_bac-type.
DR InterPro; IPR023563; Ribosomal_L13_CS.
DR PANTHER; PTHR11545; PTHR11545; 1.
DR Pfam; PF00572; Ribosomal_L13; 1.
DR SUPFAM; SSF52161; SSF52161; 1.
DR TIGRFAMs; TIGR01066; rplM_bact; 1.
DR PROSITE; PS00783; RIBOSOMAL_L13; 1.
PE 2: Evidence at transcript level;
KW Chloroplast; Complete proteome; Plastid; Reference proteome;
KW Ribonucleoprotein; Ribosomal protein; Transit peptide.
FT TRANSIT 1 50 Chloroplast. {ECO:0000250}.
FT CHAIN 51 241 50S ribosomal protein L13, chloroplastic.
FT /FTId=PRO_0000249881.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 105 240 ihamap:Ribosomal_L13 [T]
FT MYHIT 105 227 ipfam:Ribosomal_L13 [T]
FT MYHIT 195 217 ipat:RIBOSOMAL_L13 [T]
SQ SEQUENCE 241 AA; 26789 MW; BF0519F3CC570ACA CRC64;
MAVLCSSSTV ILSSSSVKSS GSERKSPFLG FSLTAISKPS VRVGIYANSK RGLQVKCEAE
PTTTTSLVPA NQRWMFDEEE ANGPDIWNTT WYPKASDHVN TDKPWFVVDA TDKILGRLAS
TIANHIRGKN LASYTPSVDM GAFVIVVNAE KVAVSGKKRN QKLYRRHSGR PGGMTVETFD
QLQQRIPERI VEHAVRGMLP KGRLGRALFN HLKVYKGPDH PHEAQKPLDL PIRDKRIQLQ
K
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