ID Q5PR94_DANRE Unreviewed; 348 AA.
AC Q5PR94;
DT 04-JAN-2005, integrated into UniProtKB/TrEMBL.
DT 04-JAN-2005, sequence version 1.
DT 10-MAY-2017, entry version 85.
DE SubName: Full=Solute carrier family 35 (GDP-fucose transporter), member C1 {ECO:0000313|Ensembl:ENSDARP00000138906};
DE SubName: Full=Zgc:101867 {ECO:0000313|EMBL:AAH86750.1};
DE SubName: Full=Zgc:101867 protein {ECO:0000313|EMBL:AAI64162.1};
GN Name=slc35c1 {ECO:0000313|Ensembl:ENSDARP00000138906,
GN ECO:0000313|ZFIN:ZDB-GENE-041212-11};
GN Synonyms=zgc:101867 {ECO:0000313|EMBL:AAH86750.1};
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Cyprinidae; Danio.
OX NCBI_TaxID=7955 {ECO:0000313|EMBL:AAH86750.1};
RN [1] {ECO:0000313|EMBL:AAH86750.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC TISSUE=Larvae {ECO:0000313|EMBL:AAH86750.1};
RG NIH - Zebrafish Gene Collection (ZGC) project;
RL Submitted (DEC-2004) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:AAI64162.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC TISSUE=PCR rescue {ECO:0000313|EMBL:AAI64162.1};
RG NIH - Zebrafish Gene Collection (ZGC) project;
RL Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|Ensembl:ENSDARP00000138906, ECO:0000313|Proteomes:UP000000437}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000138906,
RC ECO:0000313|Proteomes:UP000000437};
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
RA Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
RA McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
RA Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
RA Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
RA Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
RA Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
RA Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
RA Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
RA Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
RA Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
RA Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
RA Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
RA Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
RA Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA Saunders D., Wallis J., Babbage A., Hammond S.,
RA Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
RA Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
RA Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
RA Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
RA Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
RA Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
RA Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
RA Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
RA Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
RA Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
RA Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the
RT human genome.";
RL Nature 496:498-503(2013).
RN [4] {ECO:0000313|Ensembl:ENSDARP00000138906}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000138906};
RG Ensembl;
RL Submitted (NOV-2015) to UniProtKB.
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DR EMBL; CU463038; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; BC086750; AAH86750.1; -; mRNA.
DR EMBL; BC164162; AAI64162.1; -; mRNA.
DR RefSeq; NP_001008590.1; NM_001008590.1.
DR UniGene; Dr.84283; -.
DR STRING; 7955.ENSDARP00000107020; -.
DR Ensembl; ENSDART00000161914; ENSDARP00000138906; ENSDARG00000104669.
DR GeneID; 494047; -.
DR KEGG; dre:494047; -.
DR CTD; 55343; -.
DR ZFIN; ZDB-GENE-041212-11; slc35c1.
DR eggNOG; KOG1442; Eukaryota.
DR eggNOG; ENOG410XST0; LUCA.
DR GeneTree; ENSGT00390000013315; -.
DR HOVERGEN; HBG051670; -.
DR KO; K15279; -.
DR OMA; VVSLYWV; -.
DR OrthoDB; EOG091G0CH6; -.
DR TreeFam; TF354269; -.
DR Reactome; R-DRE-6787639; GDP-fucose biosynthesis.
DR Reactome; R-DRE-727802; Transport of nucleotide sugars.
DR Proteomes; UP000000437; Chromosome 7.
DR Bgee; ENSDARG00000091153; -.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR InterPro; IPR004853; Sugar_P_trans_dom.
DR Pfam; PF03151; TPT; 1.
PE 2: Evidence at transcript level;
KW Complete proteome {ECO:0000313|Proteomes:UP000000437};
KW Membrane {ECO:0000256|SAAS:SAAS00087042, ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000000437};
KW Transmembrane {ECO:0000256|SAAS:SAAS00087042,
KW ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAAS:SAAS00087042,
KW ECO:0000256|SAM:Phobius}.
FT TRANSMEM 20 40 Helical. {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 52 77 Helical. {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 97 115 Helical. {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 122 142 Helical. {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 148 165 Helical. {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 174 195 Helical. {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 215 232 Helical. {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 244 264 Helical. {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 302 320 Helical. {ECO:0000256|SAM:Phobius}.
FT DOMAIN 22 317 TPT. {ECO:0000259|Pfam:PF03151}.
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CC The following FT lines are automated annotations from the MyHits database.
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FT MYHIT 22 317 ipfam:TPT [T]
SQ SEQUENCE 348 AA; 38411 MW; 94CB7AD4B0A4A526 CRC64;
MAFTDSTRPG DKEEPFFMRA TKIALVVTLY WFISISMVFL NNYLLDSKEL DAPVFITFFQ
CVVSVGLCLL MSFLSSLCPG SVDFPSLKFD LRVSREILPL TIVFISMITF NNLCLKYVGV
AFYTVGRSLS TVFNVILSYV VLKQTTSLYA VLCCGVILGG FWLGVDQEAV AGSLSWAGVV
FGVIASLCVS LNAIFTKKVL PVVDGNIWKL SYYNNLNAIV LFLPLLIILG EVKSVFEFSR
LTDLHFWGMM TLGGVFGFAI GYVTGLQIKF TSPLTHNVSG TAKSCAQTVL AVVYWASEKS
TLWWTSNLMV LGGSFAYTWV KGMEMKKAPV PTETQSLNPQ KNKEDLGV
//
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