Entry euk:Q58EF7_DANRE

ID   Q58EF7_DANRE            Unreviewed;       354 AA.
AC   Q58EF7;
DT   26-APR-2005, integrated into UniProtKB/TrEMBL.
DT   26-APR-2005, sequence version 1.
DT   10-MAY-2017, entry version 94.
DE   SubName: Full=Actin-binding LIM protein 1b {ECO:0000313|Ensembl:ENSDARP00000042571};
DE   SubName: Full=Zgc:112954 {ECO:0000313|EMBL:AAH91932.1};
GN   Name=ablim1b {ECO:0000313|Ensembl:ENSDARP00000042571,
GN   ECO:0000313|ZFIN:ZDB-GENE-050327-91};
GN   Synonyms=zgc:112954 {ECO:0000313|EMBL:AAH91932.1};
OS   Danio rerio (Zebrafish) (Brachydanio rerio).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
OX   NCBI_TaxID=7955 {ECO:0000313|EMBL:AAH91932.1};
RN   [1] {ECO:0000313|EMBL:AAH91932.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=Singapore local strain {ECO:0000313|EMBL:AAH91932.1};
RC   TISSUE=Embryo {ECO:0000313|EMBL:AAH91932.1};
RG   NIH - Zebrafish Gene Collection (ZGC) project;
RL   Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|Ensembl:ENSDARP00000042571}
RP   IDENTIFICATION.
RC   STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000042571};
RG   Ensembl;
RL   Submitted (FEB-2012) to UniProtKB.
RN   [3] {ECO:0000313|Ensembl:ENSDARP00000042571, ECO:0000313|Proteomes:UP000000437}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000042571,
RC   ECO:0000313|Proteomes:UP000000437};
RX   PubMed=23594743; DOI=10.1038/nature12111;
RA   Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
RA   Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
RA   McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
RA   Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
RA   Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
RA   Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
RA   Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
RA   Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA   Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA   Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA   Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA   Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
RA   Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
RA   Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
RA   Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
RA   Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
RA   Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
RA   Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
RA   Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA   Saunders D., Wallis J., Babbage A., Hammond S.,
RA   Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
RA   Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA   Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA   Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
RA   Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
RA   Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
RA   Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
RA   Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
RA   Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
RA   Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
RA   Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
RA   Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
RA   Stemple D.L.;
RT   "The zebrafish reference genome sequence and its relationship to the
RT   human genome.";
RL   Nature 496:498-503(2013).
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DR   EMBL; BX465198; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; CU464184; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; CU915376; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; BC091932; AAH91932.1; -; mRNA.
DR   RefSeq; NP_001014385.1; NM_001014363.1.
DR   UniGene; Dr.160413; -.
DR   Ensembl; ENSDART00000042572; ENSDARP00000042571; ENSDARG00000045064.
DR   GeneID; 541550; -.
DR   KEGG; dre:541550; -.
DR   CTD; 541550; -.
DR   ZFIN; ZDB-GENE-050327-91; ablim1b.
DR   GeneTree; ENSGT00760000119039; -.
DR   HOGENOM; HOG000285997; -.
DR   HOVERGEN; HBG031499; -.
DR   Proteomes; UP000000437; Chromosome 12.
DR   Bgee; ENSDARG00000045064; -.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   InterPro; IPR032402; AbLIM_anchor.
DR   InterPro; IPR001781; Znf_LIM.
DR   Pfam; PF16182; AbLIM_anchor; 1.
DR   Pfam; PF00412; LIM; 4.
DR   SMART; SM00132; LIM; 4.
DR   PROSITE; PS00478; LIM_DOMAIN_1; 3.
DR   PROSITE; PS50023; LIM_DOMAIN_2; 4.
PE   2: Evidence at transcript level;
KW   Complete proteome {ECO:0000313|Proteomes:UP000000437};
KW   LIM domain {ECO:0000256|SAAS:SAAS00113461};
KW   Metal-binding {ECO:0000256|SAAS:SAAS00113461};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000437};
KW   Zinc {ECO:0000256|SAAS:SAAS00113461}.
FT   DOMAIN       23     82       LIM zinc-binding.
FT                                {ECO:0000259|PROSITE:PS50023}.
FT   DOMAIN       83    142       LIM zinc-binding.
FT                                {ECO:0000259|PROSITE:PS50023}.
FT   DOMAIN      150    209       LIM zinc-binding.
FT                                {ECO:0000259|PROSITE:PS50023}.
FT   DOMAIN      210    269       LIM zinc-binding.
FT                                {ECO:0000259|PROSITE:PS50023}.
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CC   The following FT lines are automated annotations from the MyHits database.
CC   --------------------------------------------------------------------------
FT   MYHIT        25     58       ipat:LIM_DOMAIN_1 [T]
FT   MYHIT       151    202       ismart:LIM [T]
FT   MYHIT        23     82       iprf:LIM_DOMAIN_2 [T]
FT   MYHIT       275    352       ipfam:AbLIM_anchor [T]
FT   MYHIT        83    142       iprf:LIM_DOMAIN_2 [T]
FT   MYHIT        84    117       ipat:LIM_DOMAIN_1 [T]
FT   MYHIT       211    253       ipfam:LIM [T]
FT   MYHIT       210    262       ismart:LIM [T]
FT   MYHIT       211    244       ipat:LIM_DOMAIN_1 [T]
FT   MYHIT       210    269       iprf:LIM_DOMAIN_2 [T]
FT   MYHIT        84    136       ipfam:LIM [T]
FT   MYHIT       150    209       iprf:LIM_DOMAIN_2 [T]
FT   MYHIT        83    135       ismart:LIM [T]
FT   MYHIT        25     79       ipfam:LIM [T]
FT   MYHIT        24     75       ismart:LIM [T]
FT   MYHIT       152    204       ipfam:LIM [T]
SQ   SEQUENCE   354 AA;  39295 MW;  315AD2FABD4C690C CRC64;
     MVMVKEKVAH PQDPHHPPGK LVIQCYKCGE PCKGEVLRVQ SKHFHIKCFT CKVCGCDLAQ
     GGFFMKNGEY LCTLDYQRLH GTRCNGCGDF VEGEVVTALG KTYHPTCFVC TVCKRPFPAG
     DRVTFNGKDC LCQRCVQPTS PTSKDISASS NCAGCGRDIK NGQALLALDS QWHLGCFKCK
     ACGKVLSGEY ISKDGSPYCE KDYQIHFGVQ CEACHQFITG KVLEAGDKHY HPSCARCSRC
     NQMFTEGEEM YLQGSTVWHP DCKNNSRVEE KYRPTRSSSE SICSRPGSSI PGSPGHTIYA
     KVDNEIIDYK DLAAIPRVKA IYDIERPDMI SYESLHSTSS TLERQGRHSP GEVK
//