Entry euk:Q561X4_DANRE

ID   Q561X4_DANRE            Unreviewed;       204 AA.
AC   Q561X4;
DT   10-MAY-2005, integrated into UniProtKB/TrEMBL.
DT   10-MAY-2005, sequence version 1.
DT   10-MAY-2017, entry version 105.
DE   SubName: Full=Nuclear transcription factor Y, beta a {ECO:0000313|Ensembl:ENSDARP00000057253};
DE   SubName: Full=Zgc:110552 {ECO:0000313|EMBL:AAH92926.1};
DE   SubName: Full=Zgc:110552 protein {ECO:0000313|EMBL:AAI64291.1};
GN   Name=nfyba {ECO:0000313|Ensembl:ENSDARP00000057253,
GN   ECO:0000313|ZFIN:ZDB-GENE-050417-13};
GN   Synonyms=zgc:110552 {ECO:0000313|EMBL:AAH92926.1};
OS   Danio rerio (Zebrafish) (Brachydanio rerio).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
OX   NCBI_TaxID=7955 {ECO:0000313|EMBL:AAH92926.1};
RN   [1] {ECO:0000313|EMBL:AAH92926.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=Singapore local strain {ECO:0000313|EMBL:AAH92926.1};
RC   TISSUE=Embryo {ECO:0000313|EMBL:AAH92926.1};
RG   NIH - Zebrafish Gene Collection (ZGC) project;
RL   Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:AAI64291.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   TISSUE=PCR rescue {ECO:0000313|EMBL:AAI64291.1};
RG   NIH - Zebrafish Gene Collection (ZGC) project;
RL   Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|Ensembl:ENSDARP00000057253}
RP   IDENTIFICATION.
RC   STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000057253};
RG   Ensembl;
RL   Submitted (FEB-2012) to UniProtKB.
RN   [4] {ECO:0000313|Ensembl:ENSDARP00000057253, ECO:0000313|Proteomes:UP000000437}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000057253,
RC   ECO:0000313|Proteomes:UP000000437};
RX   PubMed=23594743; DOI=10.1038/nature12111;
RA   Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
RA   Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
RA   McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
RA   Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
RA   Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
RA   Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
RA   Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
RA   Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA   Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA   Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA   Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA   Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
RA   Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
RA   Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
RA   Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
RA   Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
RA   Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
RA   Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
RA   Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA   Saunders D., Wallis J., Babbage A., Hammond S.,
RA   Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
RA   Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA   Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA   Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
RA   Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
RA   Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
RA   Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
RA   Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
RA   Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
RA   Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
RA   Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
RA   Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
RA   Stemple D.L.;
RT   "The zebrafish reference genome sequence and its relationship to the
RT   human genome.";
RL   Nature 496:498-503(2013).
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution-NoDerivs License
CC   -----------------------------------------------------------------------
DR   EMBL; FP236856; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; BC092926; AAH92926.1; -; mRNA.
DR   EMBL; BC164291; AAI64291.1; -; mRNA.
DR   RefSeq; NP_001017565.1; NM_001017565.1.
DR   RefSeq; XP_005168580.1; XM_005168523.3.
DR   UniGene; Dr.31402; -.
DR   STRING; 7955.ENSDARP00000057253; -.
DR   Ensembl; ENSDART00000057254; ENSDARP00000057253; ENSDARG00000039185.
DR   GeneID; 550227; -.
DR   KEGG; dre:550227; -.
DR   CTD; 550227; -.
DR   ZFIN; ZDB-GENE-050417-13; nfyba.
DR   eggNOG; KOG0869; Eukaryota.
DR   eggNOG; COG2036; LUCA.
DR   GeneTree; ENSGT00550000074689; -.
DR   HOGENOM; HOG000211832; -.
DR   HOVERGEN; HBG008864; -.
DR   KO; K08065; -.
DR   TreeFam; TF314521; -.
DR   Reactome; R-DRE-2426168; Activation of gene expression by SREBF (SREBP).
DR   Proteomes; UP000000437; Chromosome 4.
DR   Bgee; ENSDARG00000039185; -.
DR   GO; GO:0005634; C:nucleus; IEA:InterPro.
DR   GO; GO:0046982; F:protein heterodimerization activity; IEA:InterPro.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR   InterPro; IPR003958; CBFA_NFYB_domain.
DR   InterPro; IPR009072; Histone-fold.
DR   InterPro; IPR003956; Transcrpt_fac_NFYB/HAP3_CS.
DR   Pfam; PF00808; CBFD_NFYB_HMF; 1.
DR   SUPFAM; SSF47113; SSF47113; 1.
DR   PROSITE; PS00685; NFYB_HAP3; 1.
PE   1: Evidence at protein level;
KW   Complete proteome {ECO:0000313|Proteomes:UP000000437};
KW   Proteomics identification {ECO:0000213|PeptideAtlas:Q561X4};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000437}.
FT   DOMAIN       56    120       CBFD_NFYB_HMF.
FT                                {ECO:0000259|Pfam:PF00808}.
CC   --------------------------------------------------------------------------
CC   The following FT lines are automated annotations from the MyHits database.
CC   --------------------------------------------------------------------------
FT   MYHIT        87    103       ipat:NFYB_HAP3 [T]
FT   MYHIT        56    120       ipfam:CBFD_NFYB_HMF [T]
SQ   SEQUENCE   204 AA;  22455 MW;  F2C378E02150E519 CRC64;
     MDGDSSTTDT TQLGITGEYM AGGTYVLAQE DDGDESFNDH DDGNGSKDFF REQDIYLPIA
     NVARIMKNAV PQTGKIAKDA KECVQECVSE FISFITSEAS ERCHQEKRKT INGEDILFAM
     STLGFDMYVE PLKLYLQKFR EAMKGEKGIT PVAVGEGLGE DLTDETFTGQ LPAGLITADG
     QQQNVMVYTT SYQQIPGVQQ IQFS
//