Entry euk:Q503D7_DANRE

ID   Q503D7_DANRE            Unreviewed;       471 AA.
AC   Q503D7;
DT   07-JUN-2005, integrated into UniProtKB/TrEMBL.
DT   07-JUN-2005, sequence version 1.
DT   10-MAY-2017, entry version 106.
DE   SubName: Full=RNA-binding motif protein 14a {ECO:0000313|Ensembl:ENSDARP00000005830};
DE   SubName: Full=Zgc:110682 {ECO:0000313|EMBL:AAH95368.1};
DE   SubName: Full=Zgc:110682 protein {ECO:0000313|EMBL:AAI57377.1};
GN   Name=rbm14a {ECO:0000313|Ensembl:ENSDARP00000005830,
GN   ECO:0000313|ZFIN:ZDB-GENE-050522-496};
GN   Synonyms=zgc:110682 {ECO:0000313|EMBL:AAH95368.1};
OS   Danio rerio (Zebrafish) (Brachydanio rerio).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
OX   NCBI_TaxID=7955 {ECO:0000313|EMBL:AAH95368.1};
RN   [1] {ECO:0000313|EMBL:AAH95368.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=Singapore local strain {ECO:0000313|EMBL:AAH95368.1};
RC   TISSUE=Embryo {ECO:0000313|EMBL:AAH95368.1};
RG   NIH - Zebrafish Gene Collection (ZGC) project;
RL   Submitted (MAY-2005) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:AAI57377.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   TISSUE=Embryo {ECO:0000313|EMBL:AAI57377.1};
RG   NIH - Zebrafish Gene Collection (ZGC) project;
RL   Submitted (DEC-2007) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|Ensembl:ENSDARP00000005830}
RP   IDENTIFICATION.
RC   STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000005830};
RG   Ensembl;
RL   Submitted (FEB-2012) to UniProtKB.
RN   [4] {ECO:0000313|Ensembl:ENSDARP00000005830, ECO:0000313|Proteomes:UP000000437}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000005830,
RC   ECO:0000313|Proteomes:UP000000437};
RX   PubMed=23594743; DOI=10.1038/nature12111;
RA   Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
RA   Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
RA   McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
RA   Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
RA   Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
RA   Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
RA   Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
RA   Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA   Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA   Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA   Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA   Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
RA   Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
RA   Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
RA   Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
RA   Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
RA   Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
RA   Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
RA   Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA   Saunders D., Wallis J., Babbage A., Hammond S.,
RA   Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
RA   Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA   Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA   Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
RA   Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
RA   Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
RA   Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
RA   Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
RA   Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
RA   Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
RA   Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
RA   Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
RA   Stemple D.L.;
RT   "The zebrafish reference genome sequence and its relationship to the
RT   human genome.";
RL   Nature 496:498-503(2013).
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DR   EMBL; BX511175; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; BC095368; AAH95368.1; -; mRNA.
DR   EMBL; BC157376; AAI57377.1; -; mRNA.
DR   RefSeq; NP_001108616.1; NM_001115144.1.
DR   UniGene; Dr.77963; -.
DR   Ensembl; ENSDART00000009234; ENSDARP00000005830; ENSDARG00000012723.
DR   GeneID; 323721; -.
DR   KEGG; dre:323721; -.
DR   CTD; 323721; -.
DR   ZFIN; ZDB-GENE-050522-496; rbm14a.
DR   eggNOG; ENOG410J77H; Eukaryota.
DR   eggNOG; ENOG41123DD; LUCA.
DR   GeneTree; ENSGT00390000020883; -.
DR   HOGENOM; HOG000063724; -.
DR   HOVERGEN; HBG062132; -.
DR   OMA; VHMERKE; -.
DR   OrthoDB; EOG091G0DG0; -.
DR   TreeFam; TF320661; -.
DR   Proteomes; UP000000437; Chromosome 21.
DR   Bgee; ENSDARG00000012723; -.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   InterPro; IPR000504; RRM_dom.
DR   InterPro; IPR001878; Znf_CCHC.
DR   Pfam; PF00076; RRM_1; 2.
DR   SMART; SM00360; RRM; 2.
DR   SUPFAM; SSF54928; SSF54928; 2.
DR   SUPFAM; SSF57756; SSF57756; 1.
DR   PROSITE; PS50102; RRM; 2.
DR   PROSITE; PS50158; ZF_CCHC; 1.
PE   1: Evidence at protein level;
KW   Complete proteome {ECO:0000313|Proteomes:UP000000437};
KW   Proteomics identification {ECO:0000213|PeptideAtlas:Q503D7};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000437}.
FT   DOMAIN        7     77       RRM (RNA recognition motif).
FT                                {ECO:0000259|PROSITE:PS50102}.
FT   DOMAIN       83    160       RRM (RNA recognition motif).
FT                                {ECO:0000259|PROSITE:PS50102}.
FT   DOMAIN      169    183       CCHC-type. {ECO:0000259|PROSITE:PS50158}.
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CC   The following FT lines are automated annotations from the MyHits database.
CC   --------------------------------------------------------------------------
FT   MYHIT         9     70       ipfam:RRM_1 [T]
FT   MYHIT        83    160       iprf:RRM [T]
FT   MYHIT       169    183       iprf:ZF_CCHC [T]
FT   MYHIT         7     77       iprf:RRM [T]
FT   MYHIT         8     73       ismart:RRM [T]
FT   MYHIT        85    153       ipfam:RRM_1 [T]
FT   MYHIT        84    156       ismart:RRM [T]
SQ   SEQUENCE   471 AA;  51790 MW;  9F5563EA1DEED0C4 CRC64;
     MDDSSAVKLF VGNLDLETTQ DDLIALFAPF GEVVHITVLR QFAFVHLQGE GAADSAIRDL
     NGREYRGRSL VVEESKGRPL NSTKVFVGNL CASCSVEDLY DLFSPYGKVL DCDKVKTKPS
     SLTGYAFVYM EHKEDAEQAI EGLHGTTFMG RPLAVELSKV QQSTNKVPCA SCGAHGHFAG
     ECPINRPPME HHQSQAAVLA AAAAAAAGLP LQVQQSVHNS FYNTASSDPT FAALKDLTTS
     RVDGKPVSSM VYGALASQVY SSVADQVIGS TSQTAEGYPT EAEAPPGVAY GTEPDPHTLF
     EAARARFFEQ GQQVLAEQQA VTKSDRDRSP IRRTAPLLPD PSPQQFSQAR PKRRALLPTP
     PGGPELPPVK NGDPIARCYA EYYQQYQQYQ QYQQYQQYHQ YHQYQYNYPP PPPPPPAPMP
     MMPPGPMDVQ QMMAPGTSIP PRVYEPTPTH KEPLLRRPDY PHQHTSESPY R
//