MyHits has reached its end of life and no longer provides data or services. Thank you for your support and trust for more than 23 years!
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
- MyHits
| Description | SubName: Full=Zinc finger protein 527 {ECO:0000313|EMBL:AAI23538.1}; |
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| MyHits synonyms | Q08DW7_BOVIN , Q08DW7 , 3BFC4913940520A7 |
 Legends: 1, KRAB. {ECO:0000259|PROSITE:PS50805}; 2, C2H2-type. {ECO:0000259|PROSITE:PS50157}; 3, ismart:ZnF_C2H2 [T]; 4, ipat:ZINC_FINGER_C2H2_1 [T]; 5, iprf:ZINC_FINGER_C2H2_2 [T]; 6, iprf:KRAB [T].
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ID Q08DW7_BOVIN Unreviewed; 577 AA.
AC Q08DW7;
DT 31-OCT-2006, integrated into UniProtKB/TrEMBL.
DT 31-OCT-2006, sequence version 1.
DT 10-MAY-2017, entry version 99.
DE SubName: Full=Zinc finger protein 527 {ECO:0000313|EMBL:AAI23538.1};
GN Name=ZNF527 {ECO:0000313|EMBL:AAI23538.1,
GN ECO:0000313|Ensembl:ENSBTAP00000049121};
OS Bos taurus (Bovine).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia;
OC Pecora; Bovidae; Bovinae; Bos.
OX NCBI_TaxID=9913;
RN [1] {ECO:0000313|EMBL:AAI23538.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Hereford {ECO:0000313|EMBL:AAI23538.1};
RC TISSUE=Thymus {ECO:0000313|EMBL:AAI23538.1};
RA Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
RA Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
RA Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
RA Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
RA Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D.,
RA Siddiqui A., Holt R., Jones S.J., Marra M.A.;
RL Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Ensembl:ENSBTAP00000049121, ECO:0000313|Proteomes:UP000009136}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Hereford {ECO:0000313|Ensembl:ENSBTAP00000049121,
RC ECO:0000313|Proteomes:UP000009136};
RX PubMed=19393038; DOI=10.1186/gb-2009-10-4-r42;
RA Zimin A.V., Delcher A.L., Florea L., Kelley D.R., Schatz M.C.,
RA Puiu D., Hanrahan F., Pertea G., Van Tassell C.P., Sonstegard T.S.,
RA Marcais G., Roberts M., Subramanian P., Yorke J.A., Salzberg S.L.;
RT "A whole-genome assembly of the domestic cow, Bos taurus.";
RL Genome Biol. 10:R42.01-R42.10(2009).
RN [3] {ECO:0000313|Ensembl:ENSBTAP00000049121}
RP IDENTIFICATION.
RC STRAIN=Hereford {ECO:0000313|Ensembl:ENSBTAP00000049121};
RG Ensembl;
RL Submitted (MAR-2016) to UniProtKB.
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DR EMBL; DAAA02046972; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; BC123537; AAI23538.1; -; mRNA.
DR RefSeq; NP_001070382.2; NM_001076914.1.
DR UniGene; Bt.7083; -.
DR STRING; 9913.ENSBTAP00000049121; -.
DR Ensembl; ENSBTAT00000053874; ENSBTAP00000049121; ENSBTAG00000039075.
DR GeneID; 538845; -.
DR KEGG; bta:538845; -.
DR CTD; 84503; -.
DR eggNOG; KOG1721; Eukaryota.
DR eggNOG; COG5048; LUCA.
DR GeneTree; ENSGT00840000129704; -.
DR HOGENOM; HOG000234617; -.
DR HOVERGEN; HBG018163; -.
DR KO; K09228; -.
DR OMA; WESWCEI; -.
DR OrthoDB; EOG091G02KC; -.
DR TreeFam; TF350921; -.
DR Proteomes; UP000009136; Chromosome 18.
DR Bgee; ENSBTAG00000039075; -.
DR GO; GO:0005622; C:intracellular; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR Gene3D; 3.30.40.10; -; 2.
DR InterPro; IPR001909; KRAB.
DR InterPro; IPR013087; Znf_C2H2_type.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR SMART; SM00355; ZnF_C2H2; 11.
DR SUPFAM; SSF57667; SSF57667; 7.
DR PROSITE; PS50805; KRAB; 1.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 11.
DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 11.
PE 2: Evidence at transcript level;
KW Complete proteome {ECO:0000313|Proteomes:UP000009136};
KW Metal-binding {ECO:0000256|SAAS:SAAS00780264};
KW Reference proteome {ECO:0000313|Proteomes:UP000009136};
KW Repeat {ECO:0000256|SAAS:SAAS00780289};
KW Zinc {ECO:0000256|SAAS:SAAS00780264};
KW Zinc-finger {ECO:0000256|SAAS:SAAS00780264}.
FT DOMAIN 1 53 KRAB. {ECO:0000259|PROSITE:PS50805}.
FT DOMAIN 270 297 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 298 325 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 326 353 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 354 381 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 382 409 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 410 437 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 438 465 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 466 493 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 494 521 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 522 549 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 550 572 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
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FT MYHIT 326 348 ismart:ZnF_C2H2 [T]
FT MYHIT 552 572 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 356 376 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 382 404 ismart:ZnF_C2H2 [T]
FT MYHIT 354 376 ismart:ZnF_C2H2 [T]
FT MYHIT 496 516 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 550 572 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 412 432 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 440 460 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 272 292 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 494 521 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 494 516 ismart:ZnF_C2H2 [T]
FT MYHIT 382 409 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 466 488 ismart:ZnF_C2H2 [T]
FT MYHIT 522 549 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 270 292 ismart:ZnF_C2H2 [T]
FT MYHIT 438 460 ismart:ZnF_C2H2 [T]
FT MYHIT 300 320 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 438 465 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 410 432 ismart:ZnF_C2H2 [T]
FT MYHIT 298 320 ismart:ZnF_C2H2 [T]
FT MYHIT 298 325 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 1 53 iprf:KRAB [T]
FT MYHIT 410 437 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 466 493 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 326 353 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 550 572 ismart:ZnF_C2H2 [T]
FT MYHIT 522 544 ismart:ZnF_C2H2 [T]
FT MYHIT 468 488 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 384 404 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 524 544 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 328 348 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 354 381 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 270 297 iprf:ZINC_FINGER_C2H2_2 [T]
SQ SEQUENCE 577 AA; 67262 MW; 3BFC4913940520A7 CRC64;
MAGLISEGFV QRCHVGELQE LGLSISKPNM ISLLEQGKEP WMVEREMSDG QHADWESWYE
IKALSPKWYT DEEEISQGVI TKRLTSYSLE FSSFREAWKY EAEFERHQGN QERHFRQVAT
LKEISAVKKD SEYNNSERNI LLKSVLLTQQ RVPPVEQVHK FGIFNKMFPP NSVLIEHKRL
HAEKESLIGN ECEEFNQSTY LSKDVEISPG EKSYESNDFS NLLSFHSLLT QHQATHFGKS
PRGYDEYGNA FSCYSYFSQP QRIHNREKPY ACNDCGKGFS HDFFLSEHQR THIGEKPYEC
KECNKAFRQS AHLAQHQRIH TGEKPFACNE CGKAFSRYAF LVEHQRIHTG EKPYECKECN
KAFRQSAHLN QHQRIHTGEK PYECNQCGKA FSRRIALTLH QRIHTGEKPF KCNECGKTFG
YRSHLNQHQR IHTGEKPYEC IKCGKFFRTD SQLNRHHRIH TGERPFECNK CGKAFSDALV
LIHHKRSHAG EKPYECNKCG KAFSCGSYLN QHQRIHTGEK PYECNECGKA FHQVLSLRLH
QRIHAGEKPY NCNECGNNFS RASTLRRHQK IHNRKIL
//
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