Entry euk:Q08BD7_DANRE

ID   Q08BD7_DANRE            Unreviewed;       288 AA.
AC   Q08BD7;
DT   31-OCT-2006, integrated into UniProtKB/TrEMBL.
DT   31-OCT-2006, sequence version 1.
DT   10-MAY-2017, entry version 79.
DE   SubName: Full=Zgc:153911 {ECO:0000313|EMBL:AAI24772.1, ECO:0000313|Ensembl:ENSDARP00000069783};
GN   ORFNames=zgc:153911 {ECO:0000313|EMBL:AAI24772.1,
GN   ECO:0000313|Ensembl:ENSDARP00000069783,
GN   ECO:0000313|ZFIN:ZDB-GENE-061013-174};
OS   Danio rerio (Zebrafish) (Brachydanio rerio).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
OX   NCBI_TaxID=7955 {ECO:0000313|EMBL:AAI24772.1};
RN   [1] {ECO:0000313|EMBL:AAI24772.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   TISSUE=Whole {ECO:0000313|EMBL:AAI24772.1};
RG   NIH - Zebrafish Gene Collection (ZGC) project;
RL   Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:CAM73241.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Bushell K.M., Sollner C., Bockett N., Wright G.J.;
RL   Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|Ensembl:ENSDARP00000069783}
RP   IDENTIFICATION.
RC   STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000069783};
RG   Ensembl;
RL   Submitted (FEB-2012) to UniProtKB.
RN   [4] {ECO:0000313|Ensembl:ENSDARP00000069783, ECO:0000313|Proteomes:UP000000437}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000069783,
RC   ECO:0000313|Proteomes:UP000000437};
RX   PubMed=23594743; DOI=10.1038/nature12111;
RA   Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
RA   Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
RA   McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
RA   Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
RA   Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
RA   Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
RA   Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
RA   Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA   Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA   Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA   Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA   Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
RA   Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
RA   Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
RA   Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
RA   Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
RA   Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
RA   Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
RA   Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA   Saunders D., Wallis J., Babbage A., Hammond S.,
RA   Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
RA   Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA   Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA   Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
RA   Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
RA   Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
RA   Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
RA   Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
RA   Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
RA   Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
RA   Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
RA   Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
RA   Stemple D.L.;
RT   "The zebrafish reference genome sequence and its relationship to the
RT   human genome.";
RL   Nature 496:498-503(2013).
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DR   EMBL; BX510990; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; BC124771; AAI24772.1; -; mRNA.
DR   EMBL; CU458980; CAM73241.1; -; mRNA.
DR   RefSeq; NP_001070783.1; NM_001077315.1.
DR   UniGene; Dr.84301; -.
DR   Ensembl; ENSDART00000075299; ENSDARP00000069783; ENSDARG00000002509.
DR   GeneID; 768172; -.
DR   KEGG; dre:768172; -.
DR   ZFIN; ZDB-GENE-061013-174; zgc:153911.
DR   eggNOG; ENOG410JE7Q; Eukaryota.
DR   eggNOG; ENOG410YPR9; LUCA.
DR   GeneTree; ENSGT00700000104325; -.
DR   HOGENOM; HOG000205081; -.
DR   HOVERGEN; HBG105141; -.
DR   OMA; STVITWQ; -.
DR   OrthoDB; EOG091G0UTN; -.
DR   TreeFam; TF331083; -.
DR   Proteomes; UP000000437; Chromosome 13.
DR   Bgee; ENSDARG00000002509; -.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   Gene3D; 2.60.40.10; -; 2.
DR   InterPro; IPR013162; CD80_C2-set.
DR   InterPro; IPR007110; Ig-like_dom.
DR   InterPro; IPR013783; Ig-like_fold.
DR   InterPro; IPR003599; Ig_sub.
DR   InterPro; IPR013106; Ig_V-set.
DR   Pfam; PF08205; C2-set_2; 1.
DR   Pfam; PF07686; V-set; 1.
DR   SMART; SM00409; IG; 1.
DR   SUPFAM; SSF48726; SSF48726; 2.
DR   PROSITE; PS50835; IG_LIKE; 1.
PE   2: Evidence at transcript level;
KW   Complete proteome {ECO:0000313|Proteomes:UP000000437};
KW   Disulfide bond {ECO:0000256|SAAS:SAAS00504776};
KW   Membrane {ECO:0000256|SAAS:SAAS00555568, ECO:0000256|SAM:Phobius};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000437};
KW   Signal {ECO:0000256|SAM:SignalP};
KW   Transmembrane {ECO:0000256|SAAS:SAAS00555568,
KW   ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAAS:SAAS00555568,
KW   ECO:0000256|SAM:Phobius}.
FT   SIGNAL        1     17       {ECO:0000256|SAM:SignalP}.
FT   CHAIN        18    288       {ECO:0000256|SAM:SignalP}.
FT                                /FTId=PRO_5010133306.
FT   TRANSMEM    244    264       Helical. {ECO:0000256|SAM:Phobius}.
FT   DOMAIN       35    132       Ig-like (immunoglobulin-like).
FT                                {ECO:0000259|PROSITE:PS50835}.
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CC   The following FT lines are automated annotations from the MyHits database.
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FT   MYHIT        30    127       ipfam:V-set [T]
FT   MYHIT        27    134       ismart:IG [T]
FT   MYHIT        35    132       iprf:IG_LIKE [T]
FT   MYHIT       157    201       ipfam:C2-set_2 [T]
SQ   SEQUENCE   288 AA;  32748 MW;  B8B79237F5B60DCA CRC64;
     MNLKVFCFFF LLLEASCFIE FEISVPRSPV IGFYGEELIL PCTFPVDSSW DLSSTVITWQ
     RGLDVVHSFY YSRDQLDRQN PHYVSRTSLF IQEMQRGNAS LKLDKVTQRD AGVYTCSIST
     NSGSQKKSFA VNIAALYSEP RLQFSMLTDG VNLLVTSDGG YPSPTLQWLM ENSDITNQTQ
     THLRQDTSTG LYIVSSWIKL SDVSNSSLTF ILHNKPLGQD IRREIQLSSD KIEKQEENRC
     SECFILIPVA LLLLAMVLLF VFFIKRRRKA EKSKQSSSSE TKSLSENV
//