ID Q08BD7_DANRE Unreviewed; 288 AA.
AC Q08BD7;
DT 31-OCT-2006, integrated into UniProtKB/TrEMBL.
DT 31-OCT-2006, sequence version 1.
DT 10-MAY-2017, entry version 79.
DE SubName: Full=Zgc:153911 {ECO:0000313|EMBL:AAI24772.1, ECO:0000313|Ensembl:ENSDARP00000069783};
GN ORFNames=zgc:153911 {ECO:0000313|EMBL:AAI24772.1,
GN ECO:0000313|Ensembl:ENSDARP00000069783,
GN ECO:0000313|ZFIN:ZDB-GENE-061013-174};
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Cyprinidae; Danio.
OX NCBI_TaxID=7955 {ECO:0000313|EMBL:AAI24772.1};
RN [1] {ECO:0000313|EMBL:AAI24772.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC TISSUE=Whole {ECO:0000313|EMBL:AAI24772.1};
RG NIH - Zebrafish Gene Collection (ZGC) project;
RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:CAM73241.1}
RP NUCLEOTIDE SEQUENCE.
RA Bushell K.M., Sollner C., Bockett N., Wright G.J.;
RL Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|Ensembl:ENSDARP00000069783}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000069783};
RG Ensembl;
RL Submitted (FEB-2012) to UniProtKB.
RN [4] {ECO:0000313|Ensembl:ENSDARP00000069783, ECO:0000313|Proteomes:UP000000437}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000069783,
RC ECO:0000313|Proteomes:UP000000437};
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
RA Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
RA McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
RA Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
RA Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
RA Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
RA Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
RA Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
RA Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
RA Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
RA Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
RA Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
RA Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
RA Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
RA Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA Saunders D., Wallis J., Babbage A., Hammond S.,
RA Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
RA Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
RA Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
RA Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
RA Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
RA Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
RA Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
RA Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
RA Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
RA Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
RA Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the
RT human genome.";
RL Nature 496:498-503(2013).
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DR EMBL; BX510990; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; BC124771; AAI24772.1; -; mRNA.
DR EMBL; CU458980; CAM73241.1; -; mRNA.
DR RefSeq; NP_001070783.1; NM_001077315.1.
DR UniGene; Dr.84301; -.
DR Ensembl; ENSDART00000075299; ENSDARP00000069783; ENSDARG00000002509.
DR GeneID; 768172; -.
DR KEGG; dre:768172; -.
DR ZFIN; ZDB-GENE-061013-174; zgc:153911.
DR eggNOG; ENOG410JE7Q; Eukaryota.
DR eggNOG; ENOG410YPR9; LUCA.
DR GeneTree; ENSGT00700000104325; -.
DR HOGENOM; HOG000205081; -.
DR HOVERGEN; HBG105141; -.
DR OMA; STVITWQ; -.
DR OrthoDB; EOG091G0UTN; -.
DR TreeFam; TF331083; -.
DR Proteomes; UP000000437; Chromosome 13.
DR Bgee; ENSDARG00000002509; -.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR Gene3D; 2.60.40.10; -; 2.
DR InterPro; IPR013162; CD80_C2-set.
DR InterPro; IPR007110; Ig-like_dom.
DR InterPro; IPR013783; Ig-like_fold.
DR InterPro; IPR003599; Ig_sub.
DR InterPro; IPR013106; Ig_V-set.
DR Pfam; PF08205; C2-set_2; 1.
DR Pfam; PF07686; V-set; 1.
DR SMART; SM00409; IG; 1.
DR SUPFAM; SSF48726; SSF48726; 2.
DR PROSITE; PS50835; IG_LIKE; 1.
PE 2: Evidence at transcript level;
KW Complete proteome {ECO:0000313|Proteomes:UP000000437};
KW Disulfide bond {ECO:0000256|SAAS:SAAS00504776};
KW Membrane {ECO:0000256|SAAS:SAAS00555568, ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000000437};
KW Signal {ECO:0000256|SAM:SignalP};
KW Transmembrane {ECO:0000256|SAAS:SAAS00555568,
KW ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAAS:SAAS00555568,
KW ECO:0000256|SAM:Phobius}.
FT SIGNAL 1 17 {ECO:0000256|SAM:SignalP}.
FT CHAIN 18 288 {ECO:0000256|SAM:SignalP}.
FT /FTId=PRO_5010133306.
FT TRANSMEM 244 264 Helical. {ECO:0000256|SAM:Phobius}.
FT DOMAIN 35 132 Ig-like (immunoglobulin-like).
FT {ECO:0000259|PROSITE:PS50835}.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
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FT MYHIT 35 132 iprf:IG_LIKE [T]
FT MYHIT 30 127 ipfam:V-set [T]
FT MYHIT 27 134 ismart:IG [T]
FT MYHIT 157 201 ipfam:C2-set_2 [T]
SQ SEQUENCE 288 AA; 32748 MW; B8B79237F5B60DCA CRC64;
MNLKVFCFFF LLLEASCFIE FEISVPRSPV IGFYGEELIL PCTFPVDSSW DLSSTVITWQ
RGLDVVHSFY YSRDQLDRQN PHYVSRTSLF IQEMQRGNAS LKLDKVTQRD AGVYTCSIST
NSGSQKKSFA VNIAALYSEP RLQFSMLTDG VNLLVTSDGG YPSPTLQWLM ENSDITNQTQ
THLRQDTSTG LYIVSSWIKL SDVSNSSLTF ILHNKPLGQD IRREIQLSSD KIEKQEENRC
SECFILIPVA LLLLAMVLLF VFFIKRRRKA EKSKQSSSSE TKSLSENV
//
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