ID PPR13_ARATH Reviewed; 500 AA.
AC Q9MA50;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 12-APR-2017, entry version 95.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g05750, chloroplastic;
DE AltName: Full=Protein PIGMENT DEFECTIVE 247;
DE Flags: Precursor;
GN Name=PDE247; Synonyms=PCMP-E59; OrderedLocusNames=At1g05750;
GN ORFNames=T20M3.1;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
OC Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S.,
RA White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y.,
RA Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W.,
RA Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K.,
RA Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y.,
RA Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L.,
RA Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E.,
RA Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B.,
RA Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P.,
RA Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A.,
RA Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I.,
RA Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D.,
RA Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M.,
RA Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M.,
RA Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis
RT thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RG The Arabidopsis Information Portal (Araport);
RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
RA Hayashizaki Y., Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A.,
RA Le Ret M., Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P.,
RA Szurek B., Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily.
CC {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Arabidopsis PPR Protein Database;
CC URL="http://www.plantenergy.uwa.edu.au/applications/ppr/ppr.php";
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DR EMBL; AC009999; AAF29381.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE27887.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM60431.1; -; Genomic_DNA.
DR EMBL; AK221614; BAD95203.1; -; mRNA.
DR PIR; H86191; H86191.
DR RefSeq; NP_001322717.1; NM_001331574.1.
DR RefSeq; NP_172066.3; NM_100455.3.
DR UniGene; At.11883; -.
DR UniGene; At.49857; -.
DR ProteinModelPortal; Q9MA50; -.
DR SMR; Q9MA50; -.
DR BioGrid; 22325; 2.
DR STRING; 3702.AT1G05750.1; -.
DR PaxDb; Q9MA50; -.
DR PRIDE; Q9MA50; -.
DR EnsemblPlants; AT1G05750.1; AT1G05750.1; AT1G05750.
DR EnsemblPlants; AT1G05750.2; AT1G05750.2; AT1G05750.
DR GeneID; 837083; -.
DR Gramene; AT1G05750.1; AT1G05750.1; AT1G05750.
DR Gramene; AT1G05750.2; AT1G05750.2; AT1G05750.
DR KEGG; ath:AT1G05750; -.
DR Araport; AT1G05750; -.
DR TAIR; locus:2198678; AT1G05750.
DR eggNOG; KOG4197; Eukaryota.
DR eggNOG; ENOG410Z7Z7; LUCA.
DR HOGENOM; HOG000237569; -.
DR InParanoid; Q9MA50; -.
DR OMA; DAMREEH; -.
DR OrthoDB; EOG093607PL; -.
DR PhylomeDB; Q9MA50; -.
DR PRO; PR:Q9MA50; -.
DR Proteomes; UP000006548; Chromosome 1.
DR Genevisible; Q9MA50; AT.
DR GO; GO:0009507; C:chloroplast; IDA:TAIR.
DR GO; GO:0004519; F:endonuclease activity; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 3.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 9.
PE 2: Evidence at transcript level;
KW Chloroplast; Complete proteome; Plastid; Reference proteome; Repeat;
KW Transit peptide.
FT TRANSIT 1 54 Chloroplast. {ECO:0000255}.
FT CHAIN 55 500 Pentatricopeptide repeat-containing
FT protein At1g05750, chloroplastic.
FT /FTId=PRO_0000342754.
FT REPEAT 35 69 PPR 1.
FT REPEAT 70 106 PPR 2.
FT REPEAT 108 138 PPR 3.
FT REPEAT 139 173 PPR 4.
FT REPEAT 174 204 PPR 5.
FT REPEAT 205 239 PPR 6.
FT REPEAT 240 270 PPR 7.
FT REPEAT 271 305 PPR 8.
FT REPEAT 306 336 PPR 9.
FT REPEAT 342 376 PPR 10.
FT REGION 377 453 Type E motif.
FT REGION 454 484 Type E(+) motif.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 172 202 ipfam:PPR [T]
FT MYHIT 245 270 ipfam:PPR [T]
FT MYHIT 271 305 iprf:PPR [T]
FT MYHIT 342 376 iprf:PPR [T]
FT MYHIT 306 336 iprf:PPR [T]
FT MYHIT 139 173 iprf:PPR [T]
FT MYHIT 35 81 ipfam:PPR_2 [T]
FT MYHIT 413 441 ipfam:PPR [T]
FT MYHIT 138 170 ipfam:PPR_2 [T]
FT MYHIT 108 138 iprf:PPR [T]
FT MYHIT 35 69 iprf:PPR [T]
FT MYHIT 271 318 ipfam:PPR_2 [T]
FT MYHIT 174 204 iprf:PPR [T]
FT MYHIT 345 370 ipfam:PPR [T]
FT MYHIT 409 443 iprf:PPR [T]
FT MYHIT 240 270 iprf:PPR [T]
SQ SEQUENCE 500 AA; 55778 MW; 2DEEB0F79BDA33D2 CRC64;
MGLLPVVGIT SPALITHKNH ANPKIQRHNQ STSETTVSWT SRINLLTRNG RLAEAAKEFS
DMTLAGVEPN HITFIALLSG CGDFTSGSEA LGDLLHGYAC KLGLDRNHVM VGTAIIGMYS
KRGRFKKARL VFDYMEDKNS VTWNTMIDGY MRSGQVDNAA KMFDKMPERD LISWTAMING
FVKKGYQEEA LLWFREMQIS GVKPDYVAII AALNACTNLG ALSFGLWVHR YVLSQDFKNN
VRVSNSLIDL YCRCGCVEFA RQVFYNMEKR TVVSWNSVIV GFAANGNAHE SLVYFRKMQE
KGFKPDAVTF TGALTACSHV GLVEEGLRYF QIMKCDYRIS PRIEHYGCLV DLYSRAGRLE
DALKLVQSMP MKPNEVVIGS LLAACSNHGN NIVLAERLMK HLTDLNVKSH SNYVILSNMY
AADGKWEGAS KMRRKMKGLG LKKQPGFSSI EIDDCMHVFM AGDNAHVETT YIREVLELIS
SDLRLQGCVV ETLAGDLLNA
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