MyHits has reached its end of life and no longer provides data or services. Thank you for your support and trust for more than 23 years!
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
- MyHits
| Description | SubName: Full=Zinc finger protein 455 {ECO:0000313|Ensembl:ENSRNOP00000066922}; |
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| MyHits synonyms | M0RBI5_RAT , M0RBI5 , 526A1FAAE387EC8F |
 Legends: 1, KRAB. {ECO:0000259|PROSITE:PS50805}; 2, C2H2-type. {ECO:0000259|PROSITE:PS50157}; 3, ismart:ZnF_C2H2 [T]; 4, iprf:ZINC_FINGER_C2H2_2 [T]; 5, ipat:ZINC_FINGER_C2H2_1 [T]; 6, ipfam:KRAB [T]; 7, ismart:KRAB [T].
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ID M0RBI5_RAT Unreviewed; 479 AA.
AC M0RBI5;
DT 03-APR-2013, integrated into UniProtKB/TrEMBL.
DT 03-APR-2013, sequence version 1.
DT 10-MAY-2017, entry version 29.
DE SubName: Full=Zinc finger protein 455 {ECO:0000313|Ensembl:ENSRNOP00000066922};
GN Name=Zfp455 {ECO:0000313|Ensembl:ENSRNOP00000066922,
GN ECO:0000313|RGD:628788};
OS Rattus norvegicus (Rat).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
OC Muroidea; Muridae; Murinae; Rattus.
OX NCBI_TaxID=10116 {ECO:0000313|Ensembl:ENSRNOP00000066922, ECO:0000313|Proteomes:UP000002494};
RN [1] {ECO:0000313|Ensembl:ENSRNOP00000066922, ECO:0000313|Proteomes:UP000002494}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000066922,
RC ECO:0000313|Proteomes:UP000002494};
RX PubMed=15057822; DOI=10.1038/nature02426;
RG Rat Genome Sequencing Project Consortium;
RA Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J.,
RA Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G.,
RA Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G.,
RA Morgan M., Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G.,
RA Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S.,
RA Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T.,
RA Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T.,
RA Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A.,
RA Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M.,
RA Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K.,
RA Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S.,
RA Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J.,
RA Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y.,
RA Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A.,
RA Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J.,
RA D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R.,
RA Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A.,
RA Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E.,
RA Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E.,
RA Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J.,
RA Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D.,
RA Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M.,
RA Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O.,
RA Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O.,
RA Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H.,
RA Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S.,
RA Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J.,
RA Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M.,
RA Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E.,
RA Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F.,
RA Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K.,
RA Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S.,
RA Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M.,
RA Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M.,
RA Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A.,
RA Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S.,
RA Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G.,
RA Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H.,
RA Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R.,
RA Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M.,
RA Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H.,
RA Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S.,
RA Collins F.S.;
RT "Genome sequence of the Brown Norway rat yields insights into
RT mammalian evolution.";
RL Nature 428:493-521(2004).
RN [2] {ECO:0000313|Ensembl:ENSRNOP00000066922}
RP IDENTIFICATION.
RC STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000066922};
RG Ensembl;
RL Submitted (FEB-2013) to UniProtKB.
CC -!- CAUTION: The sequence shown here is derived from an Ensembl
CC automatic analysis pipeline and should be considered as
CC preliminary data. {ECO:0000313|Ensembl:ENSRNOP00000066922}.
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DR EMBL; AABR07009106; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR STRING; 10116.ENSRNOP00000049638; -.
DR PaxDb; M0RBI5; -.
DR Ensembl; ENSRNOT00000070821; ENSRNOP00000066922; ENSRNOG00000031576.
DR RGD; 628788; Zfp455.
DR eggNOG; KOG1721; Eukaryota.
DR eggNOG; COG5048; LUCA.
DR GeneTree; ENSGT00870000136589; -.
DR Proteomes; UP000002494; Chromosome 2.
DR Bgee; ENSRNOG00000031576; -.
DR ExpressionAtlas; M0RBI5; baseline.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR CDD; cd07765; KRAB_A-box; 1.
DR InterPro; IPR001909; KRAB.
DR InterPro; IPR013087; Znf_C2H2_type.
DR Pfam; PF01352; KRAB; 1.
DR SMART; SM00349; KRAB; 1.
DR SMART; SM00355; ZnF_C2H2; 12.
DR SUPFAM; SSF109640; SSF109640; 1.
DR SUPFAM; SSF57667; SSF57667; 7.
DR PROSITE; PS50805; KRAB; 1.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 12.
DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 12.
PE 4: Predicted;
KW Complete proteome {ECO:0000313|Proteomes:UP000002494};
KW Metal-binding {ECO:0000256|SAAS:SAAS00780264};
KW Reference proteome {ECO:0000313|Proteomes:UP000002494};
KW Repeat {ECO:0000256|SAAS:SAAS00780289};
KW Zinc {ECO:0000256|SAAS:SAAS00780264};
KW Zinc-finger {ECO:0000256|SAAS:SAAS00780264}.
FT DOMAIN 5 76 KRAB. {ECO:0000259|PROSITE:PS50805}.
FT DOMAIN 109 136 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 137 164 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 165 192 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 193 220 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 247 274 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 275 302 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 303 330 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 331 358 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 359 386 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 387 414 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 415 442 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 443 470 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 137 159 ismart:ZnF_C2H2 [T]
FT MYHIT 443 465 ismart:ZnF_C2H2 [T]
FT MYHIT 415 442 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 389 409 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 167 187 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 359 381 ismart:ZnF_C2H2 [T]
FT MYHIT 193 215 ismart:ZnF_C2H2 [T]
FT MYHIT 193 220 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 417 437 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 359 386 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 111 131 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 445 465 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 331 358 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 305 325 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 5 45 ipfam:KRAB [T]
FT MYHIT 165 192 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 387 409 ismart:ZnF_C2H2 [T]
FT MYHIT 249 269 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 195 215 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 109 136 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 415 437 ismart:ZnF_C2H2 [T]
FT MYHIT 277 297 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 5 76 iprf:KRAB [T]
FT MYHIT 333 353 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 443 470 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 247 274 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 165 187 ismart:ZnF_C2H2 [T]
FT MYHIT 275 297 ismart:ZnF_C2H2 [T]
FT MYHIT 137 164 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 387 414 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 139 159 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 247 269 ismart:ZnF_C2H2 [T]
FT MYHIT 109 131 ismart:ZnF_C2H2 [T]
FT MYHIT 275 302 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 303 330 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 5 65 ismart:KRAB [T]
FT MYHIT 303 325 ismart:ZnF_C2H2 [T]
FT MYHIT 331 353 ismart:ZnF_C2H2 [T]
FT MYHIT 361 381 ipat:ZINC_FINGER_C2H2_1 [T]
SQ SEQUENCE 479 AA; 56200 MW; 526A1FAAE387EC8F CRC64;
MEEMLSFWDV AIDFSPEEWE CLEPVQWNLY RDVMLENYSN FVFLGLTFSK PFLVTFLEQG
QGPWDMQRQA AAAVHPGIAL NDPNCYSKTT NCKSLLIKRR KLHIGEKPYK CEECGKALGS
LKTLSIHQRL HTGDKPYKCK ECHKAFSTRS ALFIHMKNHT DEKTHKCEEC GRLFYYPSML
KQHQRIHSRV KPYKCQECGK AFTDPSFLKK HQKIHFRKHT YQFKECVKRF SPPIHLQEQI
HTGQKPFKCG ECFKAFHNHL ALRKHQTVHF GEKPYKCEEC GRCYSTSFYL RRHQTIHSKY
KSYKCEHCGR CYSSTSCLKR HQTIHSEDNP YKCEECGKYF SSSTCLRTHQ TVHSVDNSYK
CDECGRYYSS SLSLTRHQII HSEDNPYKCE ECGKRFSCSA SLQEHQTIHT GEKPYECENC
HKAFRHHSSL RKHKTVHTGE KPYKCEKCGR CFSRHSCLRI HQAIHSDGNP SVWSVVNLC
//
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