MyHits has reached its end of life and no longer provides data or services. Thank you for your support and trust for more than 23 years!
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
- MyHits
| Description | SubName: Full=Zinc finger protein 1125 {ECO:0000313|Ensembl:ENSDARP00000139488}; |
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| MyHits synonyms | H0WF29_DANRE , H0WF29 , 565E24E87F338570 |
 Legends: 1, C2H2-type. {ECO:0000259|PROSITE:PS50157}; 2, ipat:ZINC_FINGER_C2H2_1 [T]; 3, iprf:ZINC_FINGER_C2H2_2 [T]; 4, ismart:ZnF_C2H2 [T].
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ID H0WF29_DANRE Unreviewed; 380 AA.
AC H0WF29;
DT 22-FEB-2012, integrated into UniProtKB/TrEMBL.
DT 22-FEB-2012, sequence version 1.
DT 10-MAY-2017, entry version 42.
DE SubName: Full=Zinc finger protein 1125 {ECO:0000313|Ensembl:ENSDARP00000139488};
GN Name=znf1125 {ECO:0000313|Ensembl:ENSDARP00000139488,
GN ECO:0000313|ZFIN:ZDB-GENE-110913-129};
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Cyprinidae; Danio.
OX NCBI_TaxID=7955 {ECO:0000313|Ensembl:ENSDARP00000139488, ECO:0000313|Proteomes:UP000000437};
RN [1] {ECO:0000313|Ensembl:ENSDARP00000139488, ECO:0000313|Proteomes:UP000000437}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000139488,
RC ECO:0000313|Proteomes:UP000000437};
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
RA Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
RA McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
RA Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
RA Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
RA Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
RA Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
RA Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
RA Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
RA Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
RA Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
RA Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
RA Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
RA Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
RA Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA Saunders D., Wallis J., Babbage A., Hammond S.,
RA Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
RA Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
RA Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
RA Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
RA Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
RA Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
RA Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
RA Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
RA Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
RA Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
RA Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the
RT human genome.";
RL Nature 496:498-503(2013).
RN [2] {ECO:0000313|Ensembl:ENSDARP00000139488}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000139488};
RG Ensembl;
RL Submitted (JUN-2015) to UniProtKB.
CC -!- CAUTION: The sequence shown here is derived from an Ensembl
CC automatic analysis pipeline and should be considered as
CC preliminary data. {ECO:0000313|Ensembl:ENSDARP00000139488}.
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DR EMBL; CR931788; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR Ensembl; ENSDART00000162568; ENSDARP00000139488; ENSDARG00000098758.
DR ZFIN; ZDB-GENE-110913-129; znf1125.
DR eggNOG; KOG1721; Eukaryota.
DR eggNOG; COG5048; LUCA.
DR GeneTree; ENSGT00870000136761; -.
DR OMA; DAMMICE; -.
DR OrthoDB; EOG091G02KC; -.
DR Proteomes; UP000000437; Chromosome 4.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR Gene3D; 3.30.40.10; -; 1.
DR InterPro; IPR013087; Znf_C2H2_type.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR SMART; SM00355; ZnF_C2H2; 11.
DR SUPFAM; SSF57667; SSF57667; 6.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 11.
DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 11.
PE 4: Predicted;
KW Complete proteome {ECO:0000313|Proteomes:UP000000437};
KW Reference proteome {ECO:0000313|Proteomes:UP000000437}.
FT DOMAIN 66 93 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 94 121 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 122 149 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 150 177 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 178 205 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 206 233 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 234 261 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 262 289 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 290 317 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 318 345 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 346 373 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
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CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 96 116 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 206 233 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 206 228 ismart:ZnF_C2H2 [T]
FT MYHIT 262 289 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 264 284 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 346 373 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 178 200 ismart:ZnF_C2H2 [T]
FT MYHIT 122 149 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 262 284 ismart:ZnF_C2H2 [T]
FT MYHIT 66 88 ismart:ZnF_C2H2 [T]
FT MYHIT 152 172 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 234 256 ismart:ZnF_C2H2 [T]
FT MYHIT 124 144 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 346 368 ismart:ZnF_C2H2 [T]
FT MYHIT 180 200 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 236 256 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 122 144 ismart:ZnF_C2H2 [T]
FT MYHIT 290 317 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 68 88 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 150 177 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 348 368 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 208 228 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 178 205 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 320 340 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 94 121 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 318 340 ismart:ZnF_C2H2 [T]
FT MYHIT 66 93 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 94 116 ismart:ZnF_C2H2 [T]
FT MYHIT 292 312 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 318 345 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 234 261 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 150 172 ismart:ZnF_C2H2 [T]
FT MYHIT 290 312 ismart:ZnF_C2H2 [T]
SQ SEQUENCE 380 AA; 43314 MW; 565E24E87F338570 CRC64;
MAFIKEESED VKIEETFTVK QEDLQELTDP IEENVESKEE EHHVKIEEKT HLQTDGILKR
RDENCFTCTQ CGKSFSQSSS LNLHMMSHTG EKPFTCTQCG KTFNCSSHLN QHMRIHTGEK
PFTCTQCGKS FSQSSNLNLH MRIHTGEKPF QCTQCGKSFS HSSSLNQHMR IHTGEKTFTC
SQCGKSFNCL SLLNKHMKIH TGEKPFTCTQ CGKSFSQSTS LNQHMRIHTG EKPFSCTQCG
KSFRQSSSLN QHMKIHTGEK PFTCTQCGKS FNCKPHLNQH TRIHSGEKPF TCTQCGKSFS
QSSNLNLHMI NHTGEKPFTC TQCGKSFNFL SHLNLHMRIH TGEKPFTCTQ CGRSFSHSSS
LNRHMMRHTR DKPFMSNHVV
//
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