MyHits has reached its end of life and no longer provides data or services. Thank you for your support and trust for more than 23 years!
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
- MyHits
| Description | SubName: Full=Zinc finger protein 1050 {ECO:0000313|Ensembl:ENSDARP00000125176}; |
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| MyHits synonyms | H0WE99_DANRE , H0WE99 , 85D568C12381C2BB |
 Legends: 1, C2H2-type. {ECO:0000259|PROSITE:PS50157}; 2, ipat:ZINC_FINGER_C2H2_1 [T]; 3, ismart:ZnF_C2H2 [T]; 4, iprf:ZINC_FINGER_C2H2_2 [T].
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ID H0WE99_DANRE Unreviewed; 419 AA.
AC H0WE99;
DT 22-FEB-2012, integrated into UniProtKB/TrEMBL.
DT 22-FEB-2012, sequence version 1.
DT 10-MAY-2017, entry version 45.
DE SubName: Full=Zinc finger protein 1050 {ECO:0000313|Ensembl:ENSDARP00000125176};
GN Name=znf1050 {ECO:0000313|Ensembl:ENSDARP00000125176,
GN ECO:0000313|ZFIN:ZDB-GENE-110913-27};
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Cyprinidae; Danio.
OX NCBI_TaxID=7955 {ECO:0000313|Ensembl:ENSDARP00000125176, ECO:0000313|Proteomes:UP000000437};
RN [1] {ECO:0000313|Ensembl:ENSDARP00000125176}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000125176};
RG Ensembl;
RL Submitted (JAN-2012) to UniProtKB.
RN [2] {ECO:0000313|Ensembl:ENSDARP00000125176, ECO:0000313|Proteomes:UP000000437}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000125176,
RC ECO:0000313|Proteomes:UP000000437};
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
RA Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
RA McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
RA Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
RA Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
RA Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
RA Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
RA Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
RA Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
RA Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
RA Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
RA Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
RA Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
RA Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
RA Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA Saunders D., Wallis J., Babbage A., Hammond S.,
RA Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
RA Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
RA Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
RA Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
RA Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
RA Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
RA Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
RA Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
RA Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
RA Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
RA Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the
RT human genome.";
RL Nature 496:498-503(2013).
RN [3] {ECO:0000313|Ensembl:ENSDARP00000134757}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000134757};
RG Ensembl;
RL Submitted (JUN-2015) to UniProtKB.
CC -!- CAUTION: The sequence shown here is derived from an Ensembl
CC automatic analysis pipeline and should be considered as
CC preliminary data. {ECO:0000313|Ensembl:ENSDARP00000125176}.
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DR EMBL; BX321871; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR STRING; 7955.ENSDARP00000125176; -.
DR Ensembl; ENSDART00000150655; ENSDARP00000125176; ENSDARG00000096210.
DR Ensembl; ENSDART00000157849; ENSDARP00000134757; ENSDARG00000096210.
DR ZFIN; ZDB-GENE-110913-27; znf1050.
DR eggNOG; KOG1721; Eukaryota.
DR eggNOG; COG5048; LUCA.
DR GeneTree; ENSGT00850000132477; -.
DR InParanoid; H0WE99; -.
DR OMA; CACAKCI; -.
DR OrthoDB; EOG091G02KC; -.
DR TreeFam; TF350925; -.
DR Proteomes; UP000000437; Chromosome 4.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR Gene3D; 3.30.40.10; -; 2.
DR InterPro; IPR013087; Znf_C2H2_type.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR SMART; SM00355; ZnF_C2H2; 12.
DR SUPFAM; SSF57667; SSF57667; 7.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 12.
DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 12.
PE 4: Predicted;
KW Complete proteome {ECO:0000313|Proteomes:UP000000437};
KW Reference proteome {ECO:0000313|Proteomes:UP000000437}.
FT DOMAIN 81 108 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 109 136 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 137 164 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 165 192 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 193 220 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 221 248 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 249 276 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 277 304 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 305 332 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 333 357 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 361 388 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 389 416 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 363 383 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 249 271 ismart:ZnF_C2H2 [T]
FT MYHIT 333 357 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 249 276 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 137 164 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 193 220 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 361 388 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 109 131 ismart:ZnF_C2H2 [T]
FT MYHIT 221 243 ismart:ZnF_C2H2 [T]
FT MYHIT 165 187 ismart:ZnF_C2H2 [T]
FT MYHIT 279 299 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 195 215 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 305 332 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 223 243 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 391 411 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 251 271 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 277 304 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 307 327 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 165 192 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 361 383 ismart:ZnF_C2H2 [T]
FT MYHIT 333 355 ismart:ZnF_C2H2 [T]
FT MYHIT 83 103 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 305 327 ismart:ZnF_C2H2 [T]
FT MYHIT 109 136 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 111 131 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 81 108 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 221 248 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 137 159 ismart:ZnF_C2H2 [T]
FT MYHIT 389 411 ismart:ZnF_C2H2 [T]
FT MYHIT 139 159 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 277 299 ismart:ZnF_C2H2 [T]
FT MYHIT 389 416 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 193 215 ismart:ZnF_C2H2 [T]
FT MYHIT 81 103 ismart:ZnF_C2H2 [T]
FT MYHIT 167 187 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 335 355 ipat:ZINC_FINGER_C2H2_1 [T]
SQ SEQUENCE 419 AA; 48957 MW; 85D568C12381C2BB CRC64;
MAFIKEESED LKIEETFTVK QEDLQEQTDL MVLKEETHQQ NEIDEKQQFE KPQEITTDKK
PTLTKKTSHG RPWKSKLGCN FSCKQCRKSF SQKSNLDVHM RVHTREQPFT CEQCGKSFGQ
KQSFKAHMRI HTREKPYTCQ QCEKSFYHAG HFAAHMRIHT GEKPFSCKQC GKSFSQKPNL
DVHMRVHTGE KPYTCEQCGK SFSQKQSFKT HMRIHTGERP YTCQQCGKSF RHARNLDVHM
RIHTGEKPFS CKQCRKSFSK KLNLIAHMRV HTREKPYTCE QCGKSLGKKQ DLYIHMRIHT
GEKPYTCTEC GKSFPHKNTL NHHMRTHTGE KPFTCDQCGK SFTTKFSLKN HMNGHTGTIV
FTCDQCGKSL TRKDTIKQHM KTHSREDRFR CSECGKGFKS KRSLNTHMKL HNGEQSPQH
//
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