MyHits has reached its end of life and no longer provides data or services. Thank you for your support and trust for more than 23 years!
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
- MyHits
| Description | SubName: Full=Zinc finger protein 1015 {ECO:0000313|Ensembl:ENSDARP00000125133}; |
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| MyHits synonyms | H0WE56_DANRE , H0WE56 , A0A0G2L0E0 , 7ABAB0035D3CB3A2 |
 Legends: 1, C2H2-type. {ECO:0000259|PROSITE:PS50157}; 2, ipat:ZINC_FINGER_C2H2_1 [T]; 3, iprf:ZINC_FINGER_C2H2_2 [T]; 4, ismart:ZnF_C2H2 [T].
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ID H0WE56_DANRE Unreviewed; 369 AA.
AC H0WE56; A0A0G2L0E0;
DT 22-FEB-2012, integrated into UniProtKB/TrEMBL.
DT 15-FEB-2017, sequence version 2.
DT 10-MAY-2017, entry version 41.
DE SubName: Full=Zinc finger protein 1015 {ECO:0000313|Ensembl:ENSDARP00000125133};
GN Name=znf1015 {ECO:0000313|Ensembl:ENSDARP00000125133,
GN ECO:0000313|ZFIN:ZDB-GENE-050913-139};
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Cyprinidae; Danio.
OX NCBI_TaxID=7955 {ECO:0000313|Ensembl:ENSDARP00000125133, ECO:0000313|Proteomes:UP000000437};
RN [1] {ECO:0000313|Ensembl:ENSDARP00000125133}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000125133};
RG Ensembl;
RL Submitted (JAN-2012) to UniProtKB.
RN [2] {ECO:0000313|Ensembl:ENSDARP00000125133, ECO:0000313|Proteomes:UP000000437}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000125133,
RC ECO:0000313|Proteomes:UP000000437};
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
RA Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
RA McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
RA Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
RA Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
RA Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
RA Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
RA Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
RA Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
RA Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
RA Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
RA Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
RA Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
RA Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
RA Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA Saunders D., Wallis J., Babbage A., Hammond S.,
RA Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
RA Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
RA Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
RA Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
RA Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
RA Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
RA Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
RA Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
RA Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
RA Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
RA Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the
RT human genome.";
RL Nature 496:498-503(2013).
RN [3] {ECO:0000313|Ensembl:ENSDARP00000138192}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000138192};
RG Ensembl;
RL Submitted (JUN-2015) to UniProtKB.
CC -!- CAUTION: The sequence shown here is derived from an Ensembl
CC automatic analysis pipeline and should be considered as
CC preliminary data. {ECO:0000313|Ensembl:ENSDARP00000125133}.
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DR EMBL; CU570689; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR Ensembl; ENSDART00000150837; ENSDARP00000125133; ENSDARG00000054957.
DR Ensembl; ENSDART00000170170; ENSDARP00000138192; ENSDARG00000054957.
DR ZFIN; ZDB-GENE-050913-139; znf1015.
DR GeneTree; ENSGT00870000136852; -.
DR OMA; TENAGEY; -.
DR OrthoDB; EOG091G02KC; -.
DR Proteomes; UP000000437; Chromosome 4.
DR Bgee; ENSDARG00000054957; -.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR InterPro; IPR013087; Znf_C2H2_type.
DR SMART; SM00355; ZnF_C2H2; 10.
DR SUPFAM; SSF57667; SSF57667; 6.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 10.
DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 10.
PE 4: Predicted;
KW Complete proteome {ECO:0000313|Proteomes:UP000000437};
KW Reference proteome {ECO:0000313|Proteomes:UP000000437}.
FT DOMAIN 81 108 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 110 137 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 138 165 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 166 193 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 194 221 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 222 249 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 250 277 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 278 305 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 306 333 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 334 361 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
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CC The following FT lines are automated annotations from the MyHits database.
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FT MYHIT 83 103 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 168 188 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 196 216 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 138 165 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 334 356 ismart:ZnF_C2H2 [T]
FT MYHIT 334 361 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 222 249 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 336 356 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 81 103 ismart:ZnF_C2H2 [T]
FT MYHIT 252 272 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 110 132 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 250 277 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 194 216 ismart:ZnF_C2H2 [T]
FT MYHIT 278 300 ismart:ZnF_C2H2 [T]
FT MYHIT 222 244 ismart:ZnF_C2H2 [T]
FT MYHIT 194 221 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 280 300 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 250 272 ismart:ZnF_C2H2 [T]
FT MYHIT 166 193 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 138 160 ismart:ZnF_C2H2 [T]
FT MYHIT 306 328 ismart:ZnF_C2H2 [T]
FT MYHIT 140 160 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 224 244 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 110 137 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 110 132 ismart:ZnF_C2H2 [T]
FT MYHIT 306 333 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 278 305 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 166 188 ismart:ZnF_C2H2 [T]
FT MYHIT 308 328 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 81 108 iprf:ZINC_FINGER_C2H2_2 [T]
SQ SEQUENCE 369 AA; 42909 MW; 7ABAB0035D3CB3A2 CRC64;
MAFIKEESED LKIEDTFTVK QEDPEEQTEM MLLKEETREL TEMEERDQFE KHQDLMTDEI
SKTENTLSCK KAPKARSNGS FTCCKCGESF TSKLKLESHM KTHKREPTPC TCPQCGKSFT
QKHHLKVHMR IHTGEKPYIC QQCGKRFNQS QTLKIHVTIH TGEKPYTCTQ CGKSFSQKSN
LDIHMRIHTG EKPFACQHCG IRFRQLQVLK EHVTVHTGEK PFTCSQCQKS FRLKQALEIH
TRIHTGEKPF SCQQCGRSFS QIQSIKHHMK THTGEKPYNC QQCGKLFTRK TSLNAHMNSH
TGERQFNCGQ CGKSFARKYT LNKHARMHSE EKCFICYDCG KRFSHKRSFN THMRLHAEEQ
TQKLCSSSN
//
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