ID F8W5G6_DANRE Unreviewed; 312 AA.
AC F8W5G6;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 15-MAR-2017, entry version 9.
DE SubName: Full=Zgc:100911 {ECO:0000313|Ensembl:ENSDARP00000125103};
DE Flags: Fragment;
GN ORFNames=zgc:100911 {ECO:0000313|Ensembl:ENSDARP00000125103,
GN ECO:0000313|ZFIN:ZDB-GENE-040801-162};
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Cyprinidae; Danio.
OX NCBI_TaxID=7955 {ECO:0000313|Ensembl:ENSDARP00000125103, ECO:0000313|Proteomes:UP000000437};
RN [1] {ECO:0000313|Ensembl:ENSDARP00000125103}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000125103};
RG Ensembl;
RL Submitted (FEB-2012) to UniProtKB.
RN [2] {ECO:0000313|Ensembl:ENSDARP00000125103, ECO:0000313|Proteomes:UP000000437}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000125103,
RC ECO:0000313|Proteomes:UP000000437};
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
RA Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
RA McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
RA Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
RA Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
RA Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
RA Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
RA Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
RA Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
RA Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
RA Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
RA Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
RA Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
RA Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
RA Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA Saunders D., Wallis J., Babbage A., Hammond S.,
RA Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
RA Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
RA Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
RA Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
RA Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
RA Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
RA Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
RA Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
RA Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
RA Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
RA Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the
RT human genome.";
RL Nature 496:498-503(2013).
CC -!- CAUTION: The sequence shown here is derived from an Ensembl
CC automatic analysis pipeline and should be considered as
CC preliminary data. {ECO:0000313|Ensembl:ENSDARP00000125103}.
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DR EMBL; CU905501; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR STRING; 7955.ENSDARP00000125103; -.
DR Ensembl; ENSDART00000149464; ENSDARP00000125103; ENSDARG00000036897.
DR ZFIN; ZDB-GENE-040801-162; zgc:100911.
DR eggNOG; KOG3058; Eukaryota.
DR eggNOG; ENOG410XNSC; LUCA.
DR GeneTree; ENSGT00390000001630; -.
DR TreeFam; TF314547; -.
DR Reactome; R-DRE-1660661; Sphingolipid de novo biosynthesis.
DR Proteomes; UP000000437; Chromosome 23.
DR ExpressionAtlas; F8W5G6; baseline.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR InterPro; IPR025749; Sphingomyelin_synth-like_dom.
DR Pfam; PF14360; PAP2_C; 1.
PE 4: Predicted;
KW Complete proteome {ECO:0000313|Proteomes:UP000000437};
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000000437};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 92 112 Helical. {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 138 159 Helical. {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 171 189 Helical. {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 236 255 Helical. {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 262 283 Helical. {ECO:0000256|SAM:Phobius}.
FT DOMAIN 232 307 PAP2_C. {ECO:0000259|Pfam:PF14360}.
FT NON_TER 312 312 {ECO:0000313|Ensembl:ENSDARP00000125103}.
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CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 232 307 ipfam:PAP2_C [T]
SQ SEQUENCE 312 AA; 36474 MW; FE0F22ADCD984654 CRC64;
MAQTQLLDEQ DDGQISEYHV MVTVEDSTRP QTPPTGRTHP YQDTPPFSQV DDKPKDSKQR
GFRRIRKNQD YVHITMAKSS TSRLPSEWWK TGIAFIWACF NLVLTTAMIT IVHDRVPDKS
VSPPLPDKFF DYVPRKEWAF RVTEVFGMIL VVLWFIQWLS LKYRAIVGRR FFFLQGLLYM
YRMVTMYITT LPVPSMHMEC APKLQNNSYE KLQRAYQLVT GAGLSITGSH RMCGDFLYSG
HTVMLTLTFL FIYEYSPRSR LWTVYHVICG LLSAMGMICI LMGHEHYSLD VVVAYYITSR
LFYWYHTMAN NQ
//
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