MyHits has reached its end of life and no longer provides data or services. Thank you for your support and trust for more than 23 years!
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
- MyHits
| Description | SubName: Full=Zgc:101853 {ECO:0000313|Ensembl:ENSDARP00000124114}; |
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| MyHits synonyms | F8W4W5_DANRE , F8W4W5 , 45124914A14306EC |
 Legends: 1, TRNA-binding. {ECO:0000259|PROSITE:PS50886}; 2, COILED {ECO:0000256|SAM:Coils}.
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ID F8W4W5_DANRE Unreviewed; 346 AA.
AC F8W4W5;
DT 21-SEP-2011, integrated into UniProtKB/TrEMBL.
DT 21-SEP-2011, sequence version 1.
DT 10-MAY-2017, entry version 42.
DE SubName: Full=Zgc:101853 {ECO:0000313|Ensembl:ENSDARP00000124114};
GN ORFNames=zgc:101853 {ECO:0000313|Ensembl:ENSDARP00000124114,
GN ECO:0000313|ZFIN:ZDB-GENE-041212-13};
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Cyprinidae; Danio.
OX NCBI_TaxID=7955 {ECO:0000313|Ensembl:ENSDARP00000124114, ECO:0000313|Proteomes:UP000000437};
RN [1] {ECO:0000313|Ensembl:ENSDARP00000124114}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000124114};
RG Ensembl;
RL Submitted (JUL-2011) to UniProtKB.
RN [2] {ECO:0000313|Ensembl:ENSDARP00000124114, ECO:0000313|Proteomes:UP000000437}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000124114,
RC ECO:0000313|Proteomes:UP000000437};
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
RA Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
RA McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
RA Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
RA Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
RA Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
RA Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
RA Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
RA Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
RA Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
RA Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
RA Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
RA Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
RA Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
RA Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA Saunders D., Wallis J., Babbage A., Hammond S.,
RA Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
RA Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
RA Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
RA Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
RA Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
RA Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
RA Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
RA Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
RA Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
RA Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
RA Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the
RT human genome.";
RL Nature 496:498-503(2013).
CC -!- CAUTION: The sequence shown here is derived from an Ensembl
CC automatic analysis pipeline and should be considered as
CC preliminary data. {ECO:0000313|Ensembl:ENSDARP00000124114}.
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DR EMBL; CABZ01076995; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CABZ01076996; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CU905501; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; XP_017209040.1; XM_017353551.1.
DR UniGene; Dr.79673; -.
DR STRING; 7955.ENSDARP00000124114; -.
DR PaxDb; F8W4W5; -.
DR Ensembl; ENSDART00000150186; ENSDARP00000124114; ENSDARG00000036894.
DR GeneID; 494049; -.
DR ZFIN; ZDB-GENE-041212-13; zgc:101853.
DR eggNOG; KOG2241; Eukaryota.
DR eggNOG; COG0073; LUCA.
DR GeneTree; ENSGT00790000123080; -.
DR InParanoid; F8W4W5; -.
DR OMA; RVESATY; -.
DR OrthoDB; EOG091G0OTM; -.
DR TreeFam; TF324775; -.
DR Proteomes; UP000000437; Chromosome 23.
DR Bgee; ENSDARG00000036894; -.
DR ExpressionAtlas; F8W4W5; baseline.
DR GO; GO:0017101; C:aminoacyl-tRNA synthetase multienzyme complex; IBA:GO_Central.
DR GO; GO:0017102; C:methionyl glutamyl tRNA synthetase complex; IBA:GO_Central.
DR GO; GO:0000049; F:tRNA binding; IBA:GO_Central.
DR GO; GO:0006418; P:tRNA aminoacylation for protein translation; IBA:GO_Central.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR002547; tRNA-bd_dom.
DR Pfam; PF01588; tRNA_bind; 1.
DR SUPFAM; SSF50249; SSF50249; 1.
DR PROSITE; PS50886; TRBD; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Complete proteome {ECO:0000313|Proteomes:UP000000437};
KW Reference proteome {ECO:0000313|Proteomes:UP000000437}.
FT DOMAIN 185 286 TRNA-binding.
FT {ECO:0000259|PROSITE:PS50886}.
FT COILED 88 122 {ECO:0000256|SAM:Coils}.
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CC The following FT lines are automated annotations from the MyHits database.
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FT MYHIT 185 286 iprf:TRBD [T]
FT MYHIT 191 283 ipfam:tRNA_bind [T]
SQ SEQUENCE 346 AA; 38976 MW; 45124914A14306EC CRC64;
MILHTHTHTH THTHAAAPLL EHTHGSQLKI CSLFDINNRE YPPQQMSKDK PPTSRADPPQ
QEQMMEYFTQ QILFLKEKAM LQASVREEKK LLVENAKLKK DIDDLKNLLQ DTQKRKAVKL
RQERALSASI ASTSAQLGEP APSTHTAPSA TQTHAHTHHD GRRRRERRGV SCESVCVLSR
EQKLDVSRLD LRVARILDVR KHPDSESLYV QEVELGEHAP RTVVSGLTNH VPPEQLLGSL
VVLLCNVRSV KVRGVQSQAR LLCAVNQERM EPLTPPTGAQ PGDRVTFQLY PGEPEKELNP
KQRLWERLLP DLRIDARGVA TYRGVAFEVR GKGLCRAPNI TSGNIK
//
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