MyHits has reached its end of life and no longer provides data or services. Thank you for your support and trust for more than 23 years!
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
- MyHits
| Description | SubName: Full=Zinc finger protein 527 {ECO:0000313|Ensembl:ENSXETP00000014210}; |
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| MyHits synonyms | F6VN15_XENTR , F6VN15 , 3D190B5679CDDE11 |
 Legends: 1, C2H2-type. {ECO:0000259|PROSITE:PS50157}; 2, ismart:ZnF_C2H2 [T]; 3, ipat:ZINC_FINGER_C2H2_1 [T]; 4, iprf:ZINC_FINGER_C2H2_2 [T].
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ID F6VN15_XENTR Unreviewed; 523 AA.
AC F6VN15;
DT 27-JUL-2011, integrated into UniProtKB/TrEMBL.
DT 27-JUL-2011, sequence version 1.
DT 10-MAY-2017, entry version 42.
DE SubName: Full=Zinc finger protein 527 {ECO:0000313|Ensembl:ENSXETP00000014210};
GN Name=znf527 {ECO:0000313|Ensembl:ENSXETP00000014210};
OS Xenopus tropicalis (Western clawed frog) (Silurana tropicalis).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC Silurana.
OX NCBI_TaxID=8364 {ECO:0000313|Ensembl:ENSXETP00000014210, ECO:0000313|Proteomes:UP000008143};
RN [1] {ECO:0000313|Ensembl:ENSXETP00000014210}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Nigerian {ECO:0000313|Ensembl:ENSXETP00000014210};
RX PubMed=20431018; DOI=10.1126/science.1183670;
RA Hellsten U., Harland R.M., Gilchrist M.J., Hendrix D., Jurka J.,
RA Kapitonov V., Ovcharenko I., Putnam N.H., Shu S., Taher L.,
RA Blitz I.L., Blumberg B., Dichmann D.S., Dubchak I., Amaya E.,
RA Detter J.C., Fletcher R., Gerhard D.S., Goodstein D., Graves T.,
RA Grigoriev I.V., Grimwood J., Kawashima T., Lindquist E., Lucas S.M.,
RA Mead P.E., Mitros T., Ogino H., Ohta Y., Poliakov A.V., Pollet N.,
RA Robert J., Salamov A., Sater A.K., Schmutz J., Terry A., Vize P.D.,
RA Warren W.C., Wells D., Wills A., Wilson R.K., Zimmerman L.B.,
RA Zorn A.M., Grainger R., Grammer T., Khokha M.K., Richardson P.M.,
RA Rokhsar D.S.;
RT "The genome of the Western clawed frog Xenopus tropicalis.";
RL Science 328:633-636(2010).
RN [2] {ECO:0000313|Ensembl:ENSXETP00000014210}
RP IDENTIFICATION.
RG Ensembl;
RL Submitted (JUN-2011) to UniProtKB.
CC -!- CAUTION: The sequence shown here is derived from an Ensembl
CC automatic analysis pipeline and should be considered as
CC preliminary data. {ECO:0000313|Ensembl:ENSXETP00000014210}.
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DR EMBL; AAMC01108328; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AAMC01108329; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AAMC01108330; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AAMC01108331; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AAMC01108332; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AAMC01108333; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AAMC01108334; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AAMC01108335; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AAMC01108336; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR ProteinModelPortal; F6VN15; -.
DR Ensembl; ENSXETT00000014210; ENSXETP00000014210; ENSXETG00000025955.
DR Xenbase; XB-GENE-5722518; znf527.
DR GeneTree; ENSGT00830000128467; -.
DR OMA; VHRRRTH; -.
DR Proteomes; UP000008143; Unassembled WGS sequence.
DR Bgee; ENSXETG00000025955; -.
DR ExpressionAtlas; F6VN15; baseline.
DR GO; GO:0005622; C:intracellular; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR CDD; cd07765; KRAB_A-box; 1.
DR InterPro; IPR001909; KRAB.
DR InterPro; IPR013087; Znf_C2H2_type.
DR SMART; SM00355; ZnF_C2H2; 10.
DR SUPFAM; SSF57667; SSF57667; 6.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 10.
DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 10.
PE 4: Predicted;
KW Complete proteome {ECO:0000313|Proteomes:UP000008143};
KW Metal-binding {ECO:0000256|SAAS:SAAS00780264};
KW Reference proteome {ECO:0000313|Proteomes:UP000008143};
KW Repeat {ECO:0000256|SAAS:SAAS00780289};
KW Zinc {ECO:0000256|SAAS:SAAS00780264};
KW Zinc-finger {ECO:0000256|SAAS:SAAS00780264}.
FT DOMAIN 236 263 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 264 291 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 292 319 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 320 347 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 348 375 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 376 403 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 404 431 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 432 460 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 461 489 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 490 517 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 404 426 ismart:ZnF_C2H2 [T]
FT MYHIT 238 258 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 434 455 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 350 370 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 264 286 ismart:ZnF_C2H2 [T]
FT MYHIT 348 370 ismart:ZnF_C2H2 [T]
FT MYHIT 376 398 ismart:ZnF_C2H2 [T]
FT MYHIT 376 403 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 432 455 ismart:ZnF_C2H2 [T]
FT MYHIT 236 258 ismart:ZnF_C2H2 [T]
FT MYHIT 461 489 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 294 314 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 490 517 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 322 342 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 404 431 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 461 484 ismart:ZnF_C2H2 [T]
FT MYHIT 406 426 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 378 398 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 463 484 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 490 512 ismart:ZnF_C2H2 [T]
FT MYHIT 236 263 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 320 347 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 320 342 ismart:ZnF_C2H2 [T]
FT MYHIT 264 291 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 348 375 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 266 286 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 432 460 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 292 314 ismart:ZnF_C2H2 [T]
FT MYHIT 492 512 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 292 319 iprf:ZINC_FINGER_C2H2_2 [T]
SQ SEQUENCE 523 AA; 59254 MW; 3D190B5679CDDE11 CRC64;
QGKHGKNGCY NTRKNKQCDL TLEIIYLLTG EGYVIPKKKS PTVGLGALHA PGSVIQKEND
KKILELISNI IQLLTGEVAI RCEDVSIYFS LEEWEYIKGN QALYREGIKE EEEEPQQLRP
LAACEYKDGS DVTAHTEATL CCNNDGNLTN PDVSPAEQPP PANGIKEEVA SWKEGNQSDC
SINPLTEQIQ GTDTPTPIMG CSLNSSSAED YSQYNNHFSY QRDFYKPQES HKKKRFPCPD
CGRCFSHRPN LERHQRIHTG EKPYPCSYCG KFFASQPNLD RHHRTHTGEK PFPCPECGRC
FASSSELIVH QRTHTGVKPF PCPECGKSFT NSTRLRDHHR THTGEKPYPC PECGKCFSNR
INLASHKKTH TGEKPYFCTE CGKCFGKQSH LSRHKRTHTG EKPYPCLECG KRFSDRSVLN
KHQITHTGEK PFPCTICGKC FSYPSFLKIH QERAHAKEKP FSCSECGKRF INETELTVHR
RRTHTGEKPF VCPDCGKSYS STTNLTIHYR THTGEKPYPC PDC
//
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