MyHits has reached its end of life and no longer provides data or services. Thank you for your support and trust for more than 23 years!
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
- MyHits
| Description | SubName: Full=Zinc finger protein 142 {ECO:0000313|Ensembl:ENSXETP00000030278}; |
 |
|
| MyHits synonyms | F6RKX2_XENTR , F6RKX2 , 8FE809C4769CA494 |
 Legends: 1, C2H2-type. {ECO:0000259|PROSITE:PS50157}; 2, ismart:ZnF_C2H2 [T]; 3, iprf:ZINC_FINGER_C2H2_2 [T]; 4, ipat:ZINC_FINGER_C2H2_1 [T].
| |
ID F6RKX2_XENTR Unreviewed; 1458 AA.
AC F6RKX2;
DT 27-JUL-2011, integrated into UniProtKB/TrEMBL.
DT 27-JUL-2011, sequence version 1.
DT 10-MAY-2017, entry version 35.
DE SubName: Full=Zinc finger protein 142 {ECO:0000313|Ensembl:ENSXETP00000030278};
GN Name=znf142 {ECO:0000313|Ensembl:ENSXETP00000030278};
OS Xenopus tropicalis (Western clawed frog) (Silurana tropicalis).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC Silurana.
OX NCBI_TaxID=8364 {ECO:0000313|Ensembl:ENSXETP00000030278, ECO:0000313|Proteomes:UP000008143};
RN [1] {ECO:0000313|Ensembl:ENSXETP00000030278}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Nigerian {ECO:0000313|Ensembl:ENSXETP00000030278};
RX PubMed=20431018; DOI=10.1126/science.1183670;
RA Hellsten U., Harland R.M., Gilchrist M.J., Hendrix D., Jurka J.,
RA Kapitonov V., Ovcharenko I., Putnam N.H., Shu S., Taher L.,
RA Blitz I.L., Blumberg B., Dichmann D.S., Dubchak I., Amaya E.,
RA Detter J.C., Fletcher R., Gerhard D.S., Goodstein D., Graves T.,
RA Grigoriev I.V., Grimwood J., Kawashima T., Lindquist E., Lucas S.M.,
RA Mead P.E., Mitros T., Ogino H., Ohta Y., Poliakov A.V., Pollet N.,
RA Robert J., Salamov A., Sater A.K., Schmutz J., Terry A., Vize P.D.,
RA Warren W.C., Wells D., Wills A., Wilson R.K., Zimmerman L.B.,
RA Zorn A.M., Grainger R., Grammer T., Khokha M.K., Richardson P.M.,
RA Rokhsar D.S.;
RT "The genome of the Western clawed frog Xenopus tropicalis.";
RL Science 328:633-636(2010).
RN [2] {ECO:0000313|Ensembl:ENSXETP00000030278}
RP IDENTIFICATION.
RG Ensembl;
RL Submitted (JUN-2011) to UniProtKB.
CC -!- CAUTION: The sequence shown here is derived from an Ensembl
CC automatic analysis pipeline and should be considered as
CC preliminary data. {ECO:0000313|Ensembl:ENSXETP00000030278}.
CC -----------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution-NoDerivs License
CC -----------------------------------------------------------------------
DR EMBL; AAMC01028427; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR ProteinModelPortal; F6RKX2; -.
DR STRING; 8364.ENSXETP00000030278; -.
DR PaxDb; F6RKX2; -.
DR Ensembl; ENSXETT00000030278; ENSXETP00000030278; ENSXETG00000013837.
DR Xenbase; XB-GENE-1032931; znf142.
DR eggNOG; KOG1721; Eukaryota.
DR eggNOG; COG5048; LUCA.
DR GeneTree; ENSGT00850000132342; -.
DR InParanoid; F6RKX2; -.
DR OMA; VPQHAEK; -.
DR OrthoDB; EOG091G008L; -.
DR TreeFam; TF327469; -.
DR Proteomes; UP000008143; Unassembled WGS sequence.
DR Bgee; ENSXETG00000013837; -.
DR ExpressionAtlas; F6RKX2; baseline.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR Gene3D; 3.30.40.10; -; 3.
DR InterPro; IPR013087; Znf_C2H2_type.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR SMART; SM00355; ZnF_C2H2; 35.
DR SUPFAM; SSF57667; SSF57667; 10.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 17.
DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 22.
PE 4: Predicted;
KW Complete proteome {ECO:0000313|Proteomes:UP000008143};
KW Reference proteome {ECO:0000313|Proteomes:UP000008143}.
FT DOMAIN 16 43 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 44 71 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 72 100 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 106 133 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 192 220 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 250 277 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 278 305 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 306 333 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 334 361 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 393 421 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 720 752 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 982 1010 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 1011 1035 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 1039 1067 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 1097 1125 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 1152 1174 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 1243 1270 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 1271 1298 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 1299 1326 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 1327 1355 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 1356 1383 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 1384 1411 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 1356 1378 ismart:ZnF_C2H2 [T]
FT MYHIT 306 333 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 1039 1062 ismart:ZnF_C2H2 [T]
FT MYHIT 982 1005 ismart:ZnF_C2H2 [T]
FT MYHIT 1243 1270 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 1041 1062 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 16 43 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 720 740 ismart:ZnF_C2H2 [T]
FT MYHIT 108 128 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 363 384 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 1011 1033 ismart:ZnF_C2H2 [T]
FT MYHIT 952 972 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 1299 1321 ismart:ZnF_C2H2 [T]
FT MYHIT 1097 1120 ismart:ZnF_C2H2 [T]
FT MYHIT 194 215 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 192 220 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 106 133 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 1215 1237 ismart:ZnF_C2H2 [T]
FT MYHIT 250 277 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 1177 1200 ismart:ZnF_C2H2 [T]
FT MYHIT 921 941 ismart:ZnF_C2H2 [T]
FT MYHIT 137 160 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 250 272 ismart:ZnF_C2H2 [T]
FT MYHIT 1356 1383 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 1386 1406 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 106 128 ismart:ZnF_C2H2 [T]
FT MYHIT 336 356 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 1097 1125 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 720 752 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 1152 1174 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 278 305 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 393 421 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 1154 1174 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 690 714 ismart:ZnF_C2H2 [T]
FT MYHIT 72 100 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 1099 1120 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 16 38 ismart:ZnF_C2H2 [T]
FT MYHIT 334 356 ismart:ZnF_C2H2 [T]
FT MYHIT 306 328 ismart:ZnF_C2H2 [T]
FT MYHIT 1299 1326 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 1039 1067 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 18 38 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 135 160 ismart:ZnF_C2H2 [T]
FT MYHIT 1384 1411 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 984 1005 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 1271 1293 ismart:ZnF_C2H2 [T]
FT MYHIT 278 300 ismart:ZnF_C2H2 [T]
FT MYHIT 221 244 ismart:ZnF_C2H2 [T]
FT MYHIT 1327 1355 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 1011 1035 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 982 1010 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 1068 1091 ismart:ZnF_C2H2 [T]
FT MYHIT 192 215 ismart:ZnF_C2H2 [T]
FT MYHIT 1412 1434 ismart:ZnF_C2H2 [T]
FT MYHIT 1243 1265 ismart:ZnF_C2H2 [T]
FT MYHIT 422 445 ismart:ZnF_C2H2 [T]
FT MYHIT 165 189 ismart:ZnF_C2H2 [T]
FT MYHIT 334 361 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 950 972 ismart:ZnF_C2H2 [T]
FT MYHIT 280 300 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 361 384 ismart:ZnF_C2H2 [T]
FT MYHIT 1271 1298 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 1327 1350 ismart:ZnF_C2H2 [T]
FT MYHIT 44 71 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 1152 1174 ismart:ZnF_C2H2 [T]
FT MYHIT 44 64 ismart:ZnF_C2H2 [T]
FT MYHIT 1301 1321 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 1273 1293 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 1358 1378 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 1126 1148 ismart:ZnF_C2H2 [T]
FT MYHIT 167 189 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 72 95 ismart:ZnF_C2H2 [T]
FT MYHIT 393 416 ismart:ZnF_C2H2 [T]
FT MYHIT 1384 1406 ismart:ZnF_C2H2 [T]
SQ SEQUENCE 1458 AA; 168971 MW; 8FE809C4769CA494 CRC64;
IKGDVENGKE HLFKTHMCPE CKRCFKKRTH LADHLHLHFP DPNLQCPNCH KFFTSRSKLK
IHMMREAGEK SHRCPLCDYS SVEKNALNRH MASIHEGVSN FYSDTYSCPV CQETFKLSQA
LKDHMKGHKS EPKVHLCFEQ GCEQAMSDRK DFLRHLKESH GIQAVECRYH ACSLLFKSRE
EMELHRKNHY AFHCQECDFV CSNKHTFRKH KKCGHPGKEE LSCPFCPYKS YNPVEYSDHV
GKMHANEKIH RCGDCDFATA HKRVLIRHML LHTGEKPHKC TQCDFVCRDI SYLSKHMLTH
SSDKNYMCTE CGYITKWKHY LNVHMRKHSG DLRYHCNQCA YRCHRADQLS SHKLRHQGKN
LICEVCGFGC KRKYELQKHM QSKHSQTCQV PMYQCRYCNY QTKYKQALHN HENCKHTKHR
EFHCALCPYH TFSNTSLFFH KRKAHGYTPG DKDWLARYAR MKQQISQSDL LFPYTSGSAK
SSEEQVPSGV EQNSCLEPLV GSSKVDSTSN AQEAGCLQVA DMTEASGDNN ISVTETSEEA
LGACEDPLQA REELLCFTEN LAVEDDINCG QEYEEEADPS LEDHDKMHES SETRAKFNQE
PLLCDLNDKC TDLPVHDGVQ LTIVCESSEL ADNGTTEEET SASFHEDTEE CSRPESMLRT
LRKQDKDQAE TLVLEGRVQM LVVQSRTPVY RCEKCSYITR KEGCMLQHSK SGCHARKSSL
VCEECGASFK QQRGLNTHII KKCPAILKRK KPSLQAVTSA EETISETDEG IMAESQASLT
SEIRVEHVHP LSPCQDLILE ELKGNISEKN NVLDKAQNRI IEFSSSASDD LGPDPDREKY
KFEQGKFRCL FCSFVCSREC TIICHVRDNC RELRGNSSET ALRRHLRERS VSSVDEESQN
TEEDEDHRKE FVYKIDGESR ISCPSCPFTC SQNRAMRTHM KKGCLKPGEL QCPLCSFRCM
SSAALKRHKE LHQKYSCNRA QLKCKQCDFT CKQPRCMKQH VKIRHEGVKP HRCQYCDFST
TRRYRLDAHE SLHTGVGRIS CDSCSRTFGT NSKLRLHQRR VHEKKPTHFC SLCDYSGYSQ
NDIARHMGSC HNGEPAFPCD VCQASFSSEA ALKQHSLRKH QEKATHECLQ CQFSCHSLAT
LRCHLQKHHL QLDCTICKQT FCRRQDLEEH RKSHFAHHCH LCQYAAKDRQ QLVHHYAEEH
ETPAVPGAEQ EMGLLCCPFC SFSCRHQLVY DHHVKGHGGI RVYKCSDCEY TTKNKQKITW
HSRIHTGEKP YKCHLCSYAC ADPSRLKYHM RIHKDEKKYL CPECGYKCKW VNQLKYHMTK
HTGLKPYQCE ECDYCTNRAD ALRVHRETRH REVRSFICEQ CGKAFKTRFL LKTHMRKHSE
EKPYVCNLCQ RSFRWPAGLR HHYLTHTNQH PFFCQYCTYR AKQKFQVVKH LQRHHPDQPD
IAKGVGKDPF VPSAQTCD
//
| |