MyHits has reached its end of life and no longer provides data or services. Thank you for your support and trust for more than 23 years!
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
- MyHits
| Description | SubName: Full=Cold regulated 413 plasma membrane 1 {ECO:0000313|EMBL:AEC06452.1}; |
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| MyHits synonyms | F4IJE6_ARATH , F4IJE6 , F1C99ED5185B9E24 |
 Legends: 1, TRANSMEM Helical. {ECO:0000256|SAM:Phobius}.
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ID F4IJE6_ARATH Unreviewed; 165 AA.
AC F4IJE6;
DT 28-JUN-2011, integrated into UniProtKB/TrEMBL.
DT 28-JUN-2011, sequence version 1.
DT 10-MAY-2017, entry version 39.
DE SubName: Full=Cold regulated 413 plasma membrane 1 {ECO:0000313|EMBL:AEC06452.1};
GN Name=COR413-PM1 {ECO:0000313|EMBL:AEC06452.1};
GN Synonyms=ATCOR413-PM1 {ECO:0000313|EMBL:AEC06452.1},
GN ATCYP19 {ECO:0000313|EMBL:AEC06452.1},
GN CYCLOPHILLIN 19 {ECO:0000313|EMBL:AEC06452.1},
GN FL3-5A3 {ECO:0000313|EMBL:AEC06452.1},
GN WCOR413 {ECO:0000313|EMBL:AEC06452.1},
GN WCOR413-LIKE {ECO:0000313|EMBL:AEC06452.1};
GN OrderedLocusNames=At2g15970 {ECO:0000313|Araport:AT2G15970,
GN ECO:0000313|EMBL:AEC06452.1};
GN ORFNames=F19G14.3 {ECO:0000313|EMBL:AEC06452.1},
GN F19G14_3 {ECO:0000313|EMBL:AEC06452.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
OC Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000313|EMBL:AEC06452.1, ECO:0000313|Proteomes:UP000006548};
RN [1] {ECO:0000313|EMBL:AEC06452.1, ECO:0000313|Proteomes:UP000006548}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S., Shea T.P., Benito M.I., Town C.D.,
RA Fujii C.Y., Mason T., Bowman C.L., Barnstead M., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis
RT thaliana.";
RL Nature 402:761-768(1999).
RN [2] {ECO:0000313|EMBL:AEC06452.1, ECO:0000313|Proteomes:UP000006548}
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RG The Arabidopsis Information Portal (Araport);
RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CP002685; AEC06452.1; -; Genomic_DNA.
DR RefSeq; NP_001189533.1; NM_001202604.1.
DR UniGene; At.22305; -.
DR UniGene; At.24347; -.
DR ProteinModelPortal; F4IJE6; -.
DR STRING; 3702.AT2G15970.1; -.
DR PaxDb; F4IJE6; -.
DR EnsemblPlants; AT2G15970.2; AT2G15970.2; AT2G15970.
DR GeneID; 816092; -.
DR Gramene; AT2G15970.2; AT2G15970.2; AT2G15970.
DR Araport; AT2G15970; -.
DR eggNOG; ENOG410IVQJ; Eukaryota.
DR eggNOG; ENOG4111SCF; LUCA.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; F4IJE6; baseline and differential.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR InterPro; IPR008892; COR413.
DR Pfam; PF05562; WCOR413; 1.
PE 4: Predicted;
KW Complete proteome {ECO:0000313|Proteomes:UP000006548};
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000006548};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 41 60 Helical. {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 72 90 Helical. {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 118 137 Helical. {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 143 164 Helical. {ECO:0000256|SAM:Phobius}.
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CC The following FT lines are automated annotations from the MyHits database.
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FT MYHIT 13 154 ipfam:WCOR413 [T]
SQ SEQUENCE 165 AA; 18253 MW; F1C99ED5185B9E24 CRC64;
MPMKSLRNDH GTLKAMIGSD FNELTIAAKN LATHAFTLTG LGFGTSVLEW VASIAAIYLL
VLDRTNWKTN MLTSLLIPYI FFSLPSLIFG IFRGEIGKWI AFVAVVVQLF FPKHAREYLE
LPVALVLLAV VAPNLIAGTF RDSWIGLAIC LGIGFSFSIC LFFFM
//
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