ID F1R388_DANRE Unreviewed; 436 AA.
AC F1R388;
DT 03-MAY-2011, integrated into UniProtKB/TrEMBL.
DT 09-DEC-2015, sequence version 2.
DT 10-MAY-2017, entry version 47.
DE SubName: Full=Zinc finger protein 987 {ECO:0000313|Ensembl:ENSDARP00000116276};
GN Name=znf987 {ECO:0000313|Ensembl:ENSDARP00000116276,
GN ECO:0000313|ZFIN:ZDB-GENE-120709-57};
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Cyprinidae; Danio.
OX NCBI_TaxID=7955 {ECO:0000313|Ensembl:ENSDARP00000116276, ECO:0000313|Proteomes:UP000000437};
RN [1] {ECO:0000313|Ensembl:ENSDARP00000116276}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000116276};
RG Ensembl;
RL Submitted (JUN-2011) to UniProtKB.
RN [2] {ECO:0000313|Ensembl:ENSDARP00000116276, ECO:0000313|Proteomes:UP000000437}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000116276,
RC ECO:0000313|Proteomes:UP000000437};
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
RA Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
RA McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
RA Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
RA Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
RA Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
RA Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
RA Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
RA Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
RA Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
RA Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
RA Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
RA Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
RA Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
RA Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA Saunders D., Wallis J., Babbage A., Hammond S.,
RA Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
RA Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
RA Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
RA Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
RA Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
RA Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
RA Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
RA Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
RA Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
RA Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
RA Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the
RT human genome.";
RL Nature 496:498-503(2013).
CC -!- CAUTION: The sequence shown here is derived from an Ensembl
CC automatic analysis pipeline and should be considered as
CC preliminary data. {ECO:0000313|Ensembl:ENSDARP00000116276}.
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DR EMBL; CT737127; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR STRING; 7955.ENSDARP00000116276; -.
DR PaxDb; F1R388; -.
DR Ensembl; ENSDART00000138824; ENSDARP00000116276; ENSDARG00000101147.
DR ZFIN; ZDB-GENE-120709-57; znf987.
DR eggNOG; KOG1721; Eukaryota.
DR eggNOG; COG5048; LUCA.
DR GeneTree; ENSGT00870000136704; -.
DR InParanoid; F1R388; -.
DR OMA; NEHRITH; -.
DR OrthoDB; EOG091G02KC; -.
DR TreeFam; TF343410; -.
DR Proteomes; UP000000437; Chromosome 4.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR InterPro; IPR013087; Znf_C2H2_type.
DR SMART; SM00355; ZnF_C2H2; 14.
DR SUPFAM; SSF57667; SSF57667; 8.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 14.
DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 14.
PE 4: Predicted;
KW Complete proteome {ECO:0000313|Proteomes:UP000000437};
KW Reference proteome {ECO:0000313|Proteomes:UP000000437}.
FT DOMAIN 41 68 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 69 96 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 97 124 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 125 152 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 153 180 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 181 208 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 209 236 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 237 264 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 265 292 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 293 320 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 321 348 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 349 376 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 377 404 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 405 432 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 127 147 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 71 91 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 237 259 ismart:ZnF_C2H2 [T]
FT MYHIT 379 399 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 265 287 ismart:ZnF_C2H2 [T]
FT MYHIT 377 399 ismart:ZnF_C2H2 [T]
FT MYHIT 43 63 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 405 432 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 181 208 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 153 180 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 41 68 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 237 264 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 69 96 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 125 147 ismart:ZnF_C2H2 [T]
FT MYHIT 407 427 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 293 315 ismart:ZnF_C2H2 [T]
FT MYHIT 265 292 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 351 371 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 321 343 ismart:ZnF_C2H2 [T]
FT MYHIT 211 231 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 41 63 ismart:ZnF_C2H2 [T]
FT MYHIT 209 231 ismart:ZnF_C2H2 [T]
FT MYHIT 99 119 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 125 152 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 97 124 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 209 236 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 155 175 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 239 259 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 349 376 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 293 320 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 181 203 ismart:ZnF_C2H2 [T]
FT MYHIT 349 371 ismart:ZnF_C2H2 [T]
FT MYHIT 69 91 ismart:ZnF_C2H2 [T]
FT MYHIT 321 348 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 267 287 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 323 343 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 405 427 ismart:ZnF_C2H2 [T]
FT MYHIT 153 175 ismart:ZnF_C2H2 [T]
FT MYHIT 183 203 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 97 119 ismart:ZnF_C2H2 [T]
FT MYHIT 377 404 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 295 315 ipat:ZINC_FINGER_C2H2_1 [T]
SQ SEQUENCE 436 AA; 50218 MW; 6F6A71982D7D72EE CRC64;
MKTFFFISDL IEENEGSKEE EHHVKIEEKN HFLKRRNKNR FNCTQCGKSL ANKSKLKIHM
MNHTGEKPFT CTQCGKSFSQ SSQLNQHMMI HTGEKPFTCT QCRKSFYRSF SLNQHMRIHT
GEKPFACTLC GKSFSQSTSL NLHMRIHTGE KPFTCTQCGK SFTCSTHLNQ HMVIHTGEKP
FTCTQCGKSF TRSSYLNQHM RIHNEEKPFT CTQCGKSFYC SFSLNRHMVI HTGEKPFTCT
QCGKSFSQST SLIYHMRIHT GEKPFTCTQC EKSFTCSSNL NQHMVIHTGE KPFTCTQCGK
SFYCSFYLNR HMVIHTGEKP FTCTQCGKSF SQSTSLIYHM RIHTGEKPFT CTQCEKSFTC
SSNLNQHMVI HTGEKPFTCT QCGKSFYCSF SLNRHMVIHT GEKPYTCTQC GKSFARSSYL
NQHMRIHNEQ KTSLDS
//
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