MyHits has reached its end of life and no longer provides data or services. Thank you for your support and trust for more than 23 years!
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
- MyHits
| Description | SubName: Full=Zinc finger protein 972 {ECO:0000313|Ensembl:ENSDARP00000140458}; |
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| MyHits synonyms | F1R149_DANRE , F1R149 , E199F3D1A2B39967 |
 Legends: 1, C2H2-type. {ECO:0000259|PROSITE:PS50157}; 2, ismart:ZnF_C2H2 [T]; 3, ipat:ZINC_FINGER_C2H2_1 [T]; 4, iprf:ZINC_FINGER_C2H2_2 [T].
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ID F1R149_DANRE Unreviewed; 383 AA.
AC F1R149;
DT 03-MAY-2011, integrated into UniProtKB/TrEMBL.
DT 22-FEB-2012, sequence version 2.
DT 10-MAY-2017, entry version 51.
DE SubName: Full=Zinc finger protein 972 {ECO:0000313|Ensembl:ENSDARP00000140458};
GN Name=znf972 {ECO:0000313|Ensembl:ENSDARP00000140458,
GN ECO:0000313|ZFIN:ZDB-GENE-110914-39};
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Cyprinidae; Danio.
OX NCBI_TaxID=7955 {ECO:0000313|Ensembl:ENSDARP00000140458, ECO:0000313|Proteomes:UP000000437};
RN [1] {ECO:0000313|Ensembl:ENSDARP00000140458, ECO:0000313|Proteomes:UP000000437}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000140458,
RC ECO:0000313|Proteomes:UP000000437};
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
RA Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
RA McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
RA Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
RA Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
RA Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
RA Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
RA Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
RA Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
RA Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
RA Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
RA Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
RA Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
RA Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
RA Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA Saunders D., Wallis J., Babbage A., Hammond S.,
RA Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
RA Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
RA Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
RA Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
RA Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
RA Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
RA Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
RA Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
RA Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
RA Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
RA Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the
RT human genome.";
RL Nature 496:498-503(2013).
RN [2] {ECO:0000313|Ensembl:ENSDARP00000140458}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000140458};
RG Ensembl;
RL Submitted (JUN-2015) to UniProtKB.
CC -!- CAUTION: The sequence shown here is derived from an Ensembl
CC automatic analysis pipeline and should be considered as
CC preliminary data. {ECO:0000313|Ensembl:ENSDARP00000140458}.
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DR EMBL; BX469933; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR ProteinModelPortal; F1R149; -.
DR Ensembl; ENSDART00000163191; ENSDARP00000140458; ENSDARG00000104349.
DR ZFIN; ZDB-GENE-110914-39; znf972.
DR eggNOG; KOG1721; Eukaryota.
DR eggNOG; COG5048; LUCA.
DR GeneTree; ENSGT00860000134089; -.
DR OMA; MHLKVHT; -.
DR OrthoDB; EOG091G02KC; -.
DR Proteomes; UP000000437; Chromosome 4.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR InterPro; IPR013087; Znf_C2H2_type.
DR SMART; SM00355; ZnF_C2H2; 11.
DR SUPFAM; SSF57667; SSF57667; 6.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 11.
DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 11.
PE 4: Predicted;
KW Complete proteome {ECO:0000313|Proteomes:UP000000437};
KW Reference proteome {ECO:0000313|Proteomes:UP000000437}.
FT DOMAIN 61 88 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 89 116 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 117 144 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 145 172 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 173 200 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 201 228 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 229 256 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 257 284 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 285 312 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 313 340 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 341 369 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
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CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 145 167 ismart:ZnF_C2H2 [T]
FT MYHIT 231 251 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 313 340 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 343 364 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 145 172 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 201 228 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 119 139 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 89 116 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 341 369 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 173 195 ismart:ZnF_C2H2 [T]
FT MYHIT 257 284 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 341 364 ismart:ZnF_C2H2 [T]
FT MYHIT 175 195 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 89 111 ismart:ZnF_C2H2 [T]
FT MYHIT 257 279 ismart:ZnF_C2H2 [T]
FT MYHIT 201 223 ismart:ZnF_C2H2 [T]
FT MYHIT 259 279 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 229 251 ismart:ZnF_C2H2 [T]
FT MYHIT 117 144 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 63 83 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 287 307 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 61 83 ismart:ZnF_C2H2 [T]
FT MYHIT 91 111 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 203 223 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 229 256 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 285 307 ismart:ZnF_C2H2 [T]
FT MYHIT 117 139 ismart:ZnF_C2H2 [T]
FT MYHIT 173 200 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 147 167 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 285 312 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 315 335 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 313 335 ismart:ZnF_C2H2 [T]
FT MYHIT 61 88 iprf:ZINC_FINGER_C2H2_2 [T]
SQ SEQUENCE 383 AA; 44027 MW; E199F3D1A2B39967 CRC64;
MALIKEESED VKIEETFTVK QEDLQEQTDR IEENEGSKEE KHHVKTEEKN IFLKRRNKNR
FTCTQCGKSL ANKSKLKIHM MIHTGEKPFT CTQCGKSFDC SSHLNRHMRI HTGEKPFACT
QCGKSFNCSS HLNQHMMIHT GEKPFTCTQC WKSFYCSFSL NRHMRIHTGE KPFACTQCGK
SFTCSSHLNQ HMMIHTGEKP FTCTQCGKSF SQSSSLNQHV RIHTGEKPFT CTQCGKSFYR
SFFLNQHMRI HTGEKPFACT QCGKSFSLST SLNYHMRIHT EERPFTCTQC GKSFIRSSHL
NLHMRIHTGE KPFTCTQCGK SFSLSSSLNY HMRIHTDDRP FTCTRCGKSF TRSSHLNQHM
KKNHSNALSV GSVFTAHSPL VDT
//
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