MyHits has reached its end of life and no longer provides data or services. Thank you for your support and trust for more than 23 years!
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
- MyHits
| Description | SubName: Full=Zinc finger protein 1173 {ECO:0000313|Ensembl:ENSDARP00000097056}; |
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| MyHits synonyms | F1QQW8_DANRE , F1QQW8 , FE6FC0049BCF6AE0 |
 Legends: 1, C2H2-type. {ECO:0000259|PROSITE:PS50157}; 2, ipat:ZINC_FINGER_C2H2_1 [T]; 3, ismart:ZnF_C2H2 [T]; 4, iprf:ZINC_FINGER_C2H2_2 [T].
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ID F1QQW8_DANRE Unreviewed; 263 AA.
AC F1QQW8;
DT 03-MAY-2011, integrated into UniProtKB/TrEMBL.
DT 03-MAY-2011, sequence version 1.
DT 10-MAY-2017, entry version 49.
DE SubName: Full=Zinc finger protein 1173 {ECO:0000313|Ensembl:ENSDARP00000097056};
GN Name=znf1173 {ECO:0000313|Ensembl:ENSDARP00000097056,
GN ECO:0000313|ZFIN:ZDB-GENE-080220-12};
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Cyprinidae; Danio.
OX NCBI_TaxID=7955 {ECO:0000313|Ensembl:ENSDARP00000097056, ECO:0000313|Proteomes:UP000000437};
RN [1] {ECO:0000313|Ensembl:ENSDARP00000097056}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000097056};
RG Ensembl;
RL Submitted (JUL-2011) to UniProtKB.
RN [2] {ECO:0000313|Ensembl:ENSDARP00000097056, ECO:0000313|Proteomes:UP000000437}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000097056,
RC ECO:0000313|Proteomes:UP000000437};
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
RA Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
RA McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
RA Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
RA Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
RA Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
RA Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
RA Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
RA Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
RA Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
RA Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
RA Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
RA Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
RA Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
RA Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA Saunders D., Wallis J., Babbage A., Hammond S.,
RA Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
RA Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
RA Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
RA Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
RA Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
RA Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
RA Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
RA Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
RA Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
RA Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
RA Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the
RT human genome.";
RL Nature 496:498-503(2013).
CC -!- CAUTION: The sequence shown here is derived from an Ensembl
CC automatic analysis pipeline and should be considered as
CC preliminary data. {ECO:0000313|Ensembl:ENSDARP00000097056}.
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DR EMBL; BX324210; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR STRING; 7955.ENSDARP00000097056; -.
DR PaxDb; F1QQW8; -.
DR Ensembl; ENSDART00000106278; ENSDARP00000097056; ENSDARG00000071725.
DR ZFIN; ZDB-GENE-080220-12; znf1173.
DR eggNOG; KOG1721; Eukaryota.
DR eggNOG; COG5048; LUCA.
DR GeneTree; ENSGT00800000124383; -.
DR InParanoid; F1QQW8; -.
DR OMA; RTHMQKE; -.
DR OrthoDB; EOG091G090P; -.
DR TreeFam; TF328277; -.
DR Proteomes; UP000000437; Chromosome 22.
DR Bgee; ENSDARG00000071725; -.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR Gene3D; 3.30.40.10; -; 1.
DR InterPro; IPR013087; Znf_C2H2_type.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR SMART; SM00355; ZnF_C2H2; 6.
DR SUPFAM; SSF57667; SSF57667; 4.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 6.
DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 6.
PE 4: Predicted;
KW Complete proteome {ECO:0000313|Proteomes:UP000000437};
KW Reference proteome {ECO:0000313|Proteomes:UP000000437}.
FT DOMAIN 62 89 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 90 117 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 118 141 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 175 202 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 203 230 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 231 258 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
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CC The following FT lines are automated annotations from the MyHits database.
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FT MYHIT 205 225 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 118 141 ismart:ZnF_C2H2 [T]
FT MYHIT 62 89 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 203 225 ismart:ZnF_C2H2 [T]
FT MYHIT 231 253 ismart:ZnF_C2H2 [T]
FT MYHIT 62 84 ismart:ZnF_C2H2 [T]
FT MYHIT 90 117 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 90 112 ismart:ZnF_C2H2 [T]
FT MYHIT 233 253 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 203 230 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 231 258 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 175 197 ismart:ZnF_C2H2 [T]
FT MYHIT 118 141 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 177 197 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 92 112 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 64 84 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 175 202 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 120 141 ipat:ZINC_FINGER_C2H2_1 [T]
SQ SEQUENCE 263 AA; 30325 MW; FE6FC0049BCF6AE0 CRC64;
MSDPDLGSIK QEETEELIDV IVKEESEELS EDEEKHQVKS EENTLSETEQ SILMNITTVN
GFICSQCGKS FKNKYTLNYH MMIHNGEKPY TCSHCEKSFS HSGNLKKHER THTGEKPFHC
VVCGMSFTQS SSLQRHTKKI HNLIVKEEDE EEEESEEVVE ATTVHRSVQT KDKPHSCSWC
GNSFAHQAHL REHERIHTGE KPFTCPQCGK SFRHSSSFTQ HMMIHTGEKT HTCDHCGKTF
LRPSQLKKHL GVHKRRRQIH VLC
//
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