ID F1QDQ3_DANRE Unreviewed; 298 AA.
AC F1QDQ3;
DT 03-MAY-2011, integrated into UniProtKB/TrEMBL.
DT 03-MAY-2011, sequence version 1.
DT 10-MAY-2017, entry version 47.
DE SubName: Full=Zgc:165604 {ECO:0000313|Ensembl:ENSDARP00000120058};
GN ORFNames=zgc:165604 {ECO:0000313|Ensembl:ENSDARP00000120058,
GN ECO:0000313|ZFIN:ZDB-GENE-070615-34};
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Cyprinidae; Danio.
OX NCBI_TaxID=7955 {ECO:0000313|Ensembl:ENSDARP00000120058, ECO:0000313|Proteomes:UP000000437};
RN [1] {ECO:0000313|Ensembl:ENSDARP00000120058}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000120058};
RG Ensembl;
RL Submitted (JUL-2011) to UniProtKB.
RN [2] {ECO:0000313|Ensembl:ENSDARP00000022093}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000022093};
RG Ensembl;
RL Submitted (FEB-2012) to UniProtKB.
RN [3] {ECO:0000313|Ensembl:ENSDARP00000120058, ECO:0000313|Proteomes:UP000000437}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000120058,
RC ECO:0000313|Proteomes:UP000000437};
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
RA Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
RA McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
RA Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
RA Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
RA Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
RA Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
RA Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
RA Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
RA Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
RA Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
RA Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
RA Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
RA Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
RA Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA Saunders D., Wallis J., Babbage A., Hammond S.,
RA Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
RA Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
RA Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
RA Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
RA Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
RA Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
RA Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
RA Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
RA Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
RA Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
RA Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the
RT human genome.";
RL Nature 496:498-503(2013).
CC -!- CAUTION: The sequence shown here is derived from an Ensembl
CC automatic analysis pipeline and should be considered as
CC preliminary data. {ECO:0000313|Ensembl:ENSDARP00000120058}.
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DR EMBL; CR405687; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; XP_017208316.1; XM_017352827.1.
DR UniGene; Dr.110918; -.
DR Ensembl; ENSDART00000024287; ENSDARP00000022093; ENSDARG00000021241.
DR Ensembl; ENSDART00000144869; ENSDARP00000120058; ENSDARG00000021241.
DR GeneID; 792578; -.
DR ZFIN; ZDB-GENE-070615-34; zgc:165604.
DR eggNOG; ENOG410J9R5; Eukaryota.
DR eggNOG; ENOG410Y9YS; LUCA.
DR GeneTree; ENSGT00760000119145; -.
DR OMA; LGTENCY; -.
DR OrthoDB; EOG091G05PI; -.
DR TreeFam; TF330875; -.
DR Proteomes; UP000000437; Chromosome 21.
DR Bgee; ENSDARG00000021241; -.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR Gene3D; 2.60.40.10; -; 2.
DR InterPro; IPR007110; Ig-like_dom.
DR InterPro; IPR013783; Ig-like_fold.
DR InterPro; IPR003599; Ig_sub.
DR InterPro; IPR003598; Ig_sub2.
DR InterPro; IPR013106; Ig_V-set.
DR Pfam; PF07686; V-set; 1.
DR SMART; SM00409; IG; 2.
DR SMART; SM00408; IGc2; 2.
DR SUPFAM; SSF48726; SSF48726; 2.
DR PROSITE; PS50835; IG_LIKE; 2.
PE 4: Predicted;
KW Complete proteome {ECO:0000313|Proteomes:UP000000437};
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000000437};
KW Signal {ECO:0000256|SAM:SignalP};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT SIGNAL 1 23 {ECO:0000256|SAM:SignalP}.
FT CHAIN 24 298 {ECO:0000256|SAM:SignalP}.
FT /FTId=PRO_5010114205.
FT TRANSMEM 240 264 Helical. {ECO:0000256|SAM:Phobius}.
FT DOMAIN 24 137 Ig-like (immunoglobulin-like).
FT {ECO:0000259|PROSITE:PS50835}.
FT DOMAIN 142 229 Ig-like (immunoglobulin-like).
FT {ECO:0000259|PROSITE:PS50835}.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 30 138 ipfam:V-set [T]
FT MYHIT 142 229 iprf:IG_LIKE [T]
FT MYHIT 148 231 ismart:IG [T]
FT MYHIT 24 137 iprf:IG_LIKE [T]
FT MYHIT 154 220 ismart:IGc2 [T]
FT MYHIT 36 125 ismart:IGc2 [T]
FT MYHIT 30 139 ismart:IG [T]
SQ SEQUENCE 298 AA; 32804 MW; 9BB266D02463C188 CRC64;
MGCTGRRILW LACLVSMFLQ YDAVRVTVRE SSLEVVQGDS VTLPCSFFTM MPLFRLSIIW
TLSPLSDPNS PIQVIVYDQG QVTENPSFMG RVGFAGMPWS ADIILNYTRV SDAGVYRCVV
SNPPETGDPG IGELSLTVLA PPSLPMCLWE GNTDTGGNVR LSCVVAEGFP TPQVIWEKLE
PDKMTLPVNM DGDMTGSVHI ANVSTQSSGL YRCSVTNSLG TQHCYINLSV YTPPDNSPGI
LQGVLLSLSM ALLLLALMVL VLWLHRSAQE SKWRNSHEED DCYNEIKYTP SLIKRSFV
//
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