MyHits has reached its end of life and no longer provides data or services. Thank you for your support and trust for more than 23 years!
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
- MyHits
| Description | SubName: Full=Zgc:171220 {ECO:0000313|Ensembl:ENSDARP00000139913}; |
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| MyHits synonyms | F1QBK6_DANRE , F1QBK6 , 8AD8A77E5AE07AB7 |
 Legends: 1, C2H2-type. {ECO:0000259|PROSITE:PS50157}; 2, ismart:ZnF_C2H2 [T]; 3, ipat:ZINC_FINGER_C2H2_1 [T]; 4, iprf:ZINC_FINGER_C2H2_2 [T].
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ID F1QBK6_DANRE Unreviewed; 517 AA.
AC F1QBK6;
DT 03-MAY-2011, integrated into UniProtKB/TrEMBL.
DT 03-MAY-2011, sequence version 1.
DT 10-MAY-2017, entry version 51.
DE SubName: Full=Zgc:171220 {ECO:0000313|Ensembl:ENSDARP00000139913};
GN ORFNames=zgc:171220 {ECO:0000313|Ensembl:ENSDARP00000139913,
GN ECO:0000313|ZFIN:ZDB-GENE-071004-11};
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Cyprinidae; Danio.
OX NCBI_TaxID=7955 {ECO:0000313|Ensembl:ENSDARP00000139913, ECO:0000313|Proteomes:UP000000437};
RN [1] {ECO:0000313|Ensembl:ENSDARP00000139913, ECO:0000313|Proteomes:UP000000437}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000139913,
RC ECO:0000313|Proteomes:UP000000437};
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
RA Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
RA McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
RA Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
RA Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
RA Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
RA Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
RA Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
RA Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
RA Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
RA Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
RA Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
RA Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
RA Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
RA Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA Saunders D., Wallis J., Babbage A., Hammond S.,
RA Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
RA Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
RA Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
RA Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
RA Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
RA Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
RA Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
RA Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
RA Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
RA Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
RA Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the
RT human genome.";
RL Nature 496:498-503(2013).
RN [2] {ECO:0000313|Ensembl:ENSDARP00000139913}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000139913};
RG Ensembl;
RL Submitted (NOV-2015) to UniProtKB.
CC -!- CAUTION: The sequence shown here is derived from an Ensembl
CC automatic analysis pipeline and should be considered as
CC preliminary data. {ECO:0000313|Ensembl:ENSDARP00000139913}.
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DR EMBL; BX510922; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; XP_017208231.1; XM_017352742.1.
DR UniGene; Dr.133809; -.
DR Ensembl; ENSDART00000163405; ENSDARP00000139913; ENSDARG00000102959.
DR Ensembl; ENSDART00000164608; ENSDARP00000138254; ENSDARG00000102959.
DR Ensembl; ENSDART00000169897; ENSDARP00000130802; ENSDARG00000102959.
DR GeneID; 100126101; -.
DR ZFIN; ZDB-GENE-071004-11; zgc:171220.
DR GeneTree; ENSGT00870000136402; -.
DR OrthoDB; EOG091G0AUB; -.
DR Proteomes; UP000000437; Chromosome 21.
DR Bgee; ENSDARG00000076885; -.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR Gene3D; 3.30.40.10; -; 2.
DR InterPro; IPR013087; Znf_C2H2_type.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR SMART; SM00355; ZnF_C2H2; 16.
DR SUPFAM; SSF57667; SSF57667; 9.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 15.
DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 16.
PE 4: Predicted;
KW Complete proteome {ECO:0000313|Proteomes:UP000000437};
KW Reference proteome {ECO:0000313|Proteomes:UP000000437}.
FT DOMAIN 64 92 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 93 120 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 121 148 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 149 176 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 177 204 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 205 232 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 233 260 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 261 288 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 289 316 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 317 344 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 345 372 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 373 400 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 401 428 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 429 456 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 455 482 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 483 510 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 455 477 ismart:ZnF_C2H2 [T]
FT MYHIT 291 311 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 289 311 ismart:ZnF_C2H2 [T]
FT MYHIT 455 482 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 235 255 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 205 227 ismart:ZnF_C2H2 [T]
FT MYHIT 401 423 ismart:ZnF_C2H2 [T]
FT MYHIT 485 505 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 179 199 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 121 148 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 233 260 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 205 232 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 431 451 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 319 339 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 289 316 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 93 115 ismart:ZnF_C2H2 [T]
FT MYHIT 177 204 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 207 227 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 483 505 ismart:ZnF_C2H2 [T]
FT MYHIT 261 288 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 149 169 ismart:ZnF_C2H2 [T]
FT MYHIT 95 115 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 483 510 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 66 87 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 261 283 ismart:ZnF_C2H2 [T]
FT MYHIT 403 423 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 457 477 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 373 395 ismart:ZnF_C2H2 [T]
FT MYHIT 429 456 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 123 143 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 345 367 ismart:ZnF_C2H2 [T]
FT MYHIT 93 120 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 64 92 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 317 339 ismart:ZnF_C2H2 [T]
FT MYHIT 375 395 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 317 344 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 121 143 ismart:ZnF_C2H2 [T]
FT MYHIT 429 451 ismart:ZnF_C2H2 [T]
FT MYHIT 64 87 ismart:ZnF_C2H2 [T]
FT MYHIT 177 199 ismart:ZnF_C2H2 [T]
FT MYHIT 233 255 ismart:ZnF_C2H2 [T]
FT MYHIT 401 428 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 345 372 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 373 400 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 263 283 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 149 176 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 347 367 ipat:ZINC_FINGER_C2H2_1 [T]
SQ SEQUENCE 517 AA; 59001 MW; 8AD8A77E5AE07AB7 CRC64;
MEIKEEPCRI KDEETEELID QTEVNEDKQH LFNNPEGFSG ENPQIKTEPN AKKRDRTIGA
KGSFTCSECG KVFRIESWLK RHTLMVHNGE TLLTCSPCGK SFINEAKLDK HLKSHTRNRS
FTCTECGKIF KSEDKLNNHV RIHDKERPFS CSVCGKSFKT EHNLSQHQRV YCDVKPLSCD
QCHKTFLSRS LLKLHLVVHS GERPYVCSLC GKSFLYLNRL NAHERNHAEV KPHVCSLCGK
SFLYMNRLKE HELIHSGVRS HVCPHCGKSF STKRNLKKHQ SVHVEVNPFS CTHCGKTFRN
KRSVQNHLIA HAGVKSFSCD QCDKSFIRAS YLNRHLKVHA GLKPHVCSTC GRSFSILQCL
KRHQLVHTGE RPHSCSDCGK SFRTSNYLRK HQRIHTGEKP YSCAQCGKSF RCTKNLKLHQ
RSHSGEKPFS CDQCHKTFAC PSNLSKHLKA HAAGRVCSDC GQSFRTSAEL KTHQRIHTGE
KPYQCSLCGN RYALSGSLKL HERVHRKEEL QQCSSSG
//
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