ID F1Q8L5_DANRE Unreviewed; 345 AA.
AC F1Q8L5; H0WE88;
DT 03-MAY-2011, integrated into UniProtKB/TrEMBL.
DT 09-DEC-2015, sequence version 2.
DT 10-MAY-2017, entry version 46.
DE SubName: Full=Zinc finger protein 988 {ECO:0000313|Ensembl:ENSDARP00000106945};
GN Name=znf1023 {ECO:0000313|ZFIN:ZDB-GENE-080218-24};
GN Synonyms=znf988 {ECO:0000313|Ensembl:ENSDARP00000106945};
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Cyprinidae; Danio.
OX NCBI_TaxID=7955 {ECO:0000313|Ensembl:ENSDARP00000106945, ECO:0000313|Proteomes:UP000000437};
RN [1] {ECO:0000313|Ensembl:ENSDARP00000106945}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000106945};
RG Ensembl;
RL Submitted (JUL-2011) to UniProtKB.
RN [2] {ECO:0000313|Ensembl:ENSDARP00000106945, ECO:0000313|Proteomes:UP000000437}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000106945,
RC ECO:0000313|Proteomes:UP000000437};
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
RA Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
RA McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
RA Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
RA Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
RA Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
RA Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
RA Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
RA Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
RA Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
RA Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
RA Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
RA Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
RA Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
RA Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA Saunders D., Wallis J., Babbage A., Hammond S.,
RA Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
RA Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
RA Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
RA Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
RA Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
RA Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
RA Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
RA Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
RA Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
RA Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
RA Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the
RT human genome.";
RL Nature 496:498-503(2013).
CC -!- CAUTION: The sequence shown here is derived from an Ensembl
CC automatic analysis pipeline and should be considered as
CC preliminary data. {ECO:0000313|Ensembl:ENSDARP00000106945}.
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DR EMBL; BX928743; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR ProteinModelPortal; F1Q8L5; -.
DR STRING; 7955.ENSDARP00000106945; -.
DR PaxDb; F1Q8L5; -.
DR Ensembl; ENSDART00000124817; ENSDARP00000106945; ENSDARG00000105219.
DR ZFIN; ZDB-GENE-080218-24; znf1023.
DR ZFIN; ZDB-GENE-110914-28; znf988.
DR eggNOG; KOG1721; Eukaryota.
DR eggNOG; COG5048; LUCA.
DR GeneTree; ENSGT00870000136754; -.
DR InParanoid; F1Q8L5; -.
DR OMA; SESKYSC; -.
DR TreeFam; TF343410; -.
DR Proteomes; UP000000437; Chromosome 4.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR InterPro; IPR013087; Znf_C2H2_type.
DR SMART; SM00355; ZnF_C2H2; 10.
DR SUPFAM; SSF57667; SSF57667; 6.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 9.
DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 10.
PE 4: Predicted;
KW Complete proteome {ECO:0000313|Proteomes:UP000000437};
KW Reference proteome {ECO:0000313|Proteomes:UP000000437}.
FT DOMAIN 66 93 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 94 121 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 122 149 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 150 177 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 178 205 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 206 233 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 234 261 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 262 289 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 290 317 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 318 345 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 318 340 ismart:ZnF_C2H2 [T]
FT MYHIT 208 228 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 94 121 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 150 172 ismart:ZnF_C2H2 [T]
FT MYHIT 96 116 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 66 93 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 178 205 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 206 228 ismart:ZnF_C2H2 [T]
FT MYHIT 180 200 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 292 312 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 150 177 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 122 144 ismart:ZnF_C2H2 [T]
FT MYHIT 178 200 ismart:ZnF_C2H2 [T]
FT MYHIT 290 312 ismart:ZnF_C2H2 [T]
FT MYHIT 290 317 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 234 261 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 262 289 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 122 149 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 264 284 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 236 256 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 152 172 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 94 116 ismart:ZnF_C2H2 [T]
FT MYHIT 318 345 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 234 256 ismart:ZnF_C2H2 [T]
FT MYHIT 206 233 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 124 144 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 262 284 ismart:ZnF_C2H2 [T]
FT MYHIT 320 340 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 63 88 ismart:ZnF_C2H2 [T]
SQ SEQUENCE 345 AA; 39564 MW; EF0AD6E7DF1BC9CF CRC64;
MAFIKEESED VKIEETFTVK QEDLQEQTDL IKDYEESKEE EHHVKIEDRT HLETDGIFKV
RDKSCVTCTQ YGKSLTSKSK LKTHMMIHTG EKPFTCTQCG NSFSKSSYLN QHMRIHTGEK
PFTCTQCGKS FSQSSSLNQH MRIHTGEKPF TCTQCGKGFS CSSSLNKHMM GHTGKKPFTC
TQCGKSFSRS SSLNHHMRIH TGEKPFTCTQ CGKSFSRSSS LNQHMRIHTG EKPFTCTQCG
KSFSKLSSLY RHMKIHTGEK PFTCTHCGKS FSQSSYLNLH MWIHTGEKPF TCPQCGKNFN
QSSYLIKHMR IHTDVREYMC LECEKTFITA AELKRHQKIH TGKKP
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