ID F1LN08_RAT Unreviewed; 609 AA.
AC F1LN08;
DT 03-MAY-2011, integrated into UniProtKB/TrEMBL.
DT 03-MAY-2011, sequence version 1.
DT 10-MAY-2017, entry version 40.
DE SubName: Full=Zinc finger protein (C2H2 type) 276 {ECO:0000313|Ensembl:ENSRNOP00000022324};
GN Name=Zfp276 {ECO:0000313|Ensembl:ENSRNOP00000022324,
GN ECO:0000313|RGD:1307469};
OS Rattus norvegicus (Rat).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
OC Muroidea; Muridae; Murinae; Rattus.
OX NCBI_TaxID=10116 {ECO:0000313|Ensembl:ENSRNOP00000022324, ECO:0000313|Proteomes:UP000002494};
RN [1] {ECO:0000313|Ensembl:ENSRNOP00000022324, ECO:0000313|Proteomes:UP000002494}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000022324,
RC ECO:0000313|Proteomes:UP000002494};
RX PubMed=15057822; DOI=10.1038/nature02426;
RG Rat Genome Sequencing Project Consortium;
RA Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J.,
RA Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G.,
RA Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G.,
RA Morgan M., Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G.,
RA Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S.,
RA Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T.,
RA Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T.,
RA Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A.,
RA Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M.,
RA Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K.,
RA Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S.,
RA Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J.,
RA Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y.,
RA Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A.,
RA Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J.,
RA D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R.,
RA Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A.,
RA Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E.,
RA Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E.,
RA Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J.,
RA Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D.,
RA Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M.,
RA Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O.,
RA Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O.,
RA Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H.,
RA Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S.,
RA Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J.,
RA Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M.,
RA Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E.,
RA Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F.,
RA Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K.,
RA Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S.,
RA Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M.,
RA Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M.,
RA Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A.,
RA Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S.,
RA Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G.,
RA Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H.,
RA Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R.,
RA Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M.,
RA Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H.,
RA Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S.,
RA Collins F.S.;
RT "Genome sequence of the Brown Norway rat yields insights into
RT mammalian evolution.";
RL Nature 428:493-521(2004).
RN [2] {ECO:0000313|Ensembl:ENSRNOP00000022324}
RP IDENTIFICATION.
RC STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000022324};
RG Ensembl;
RL Submitted (JUL-2011) to UniProtKB.
CC -!- CAUTION: The sequence shown here is derived from an Ensembl
CC automatic analysis pipeline and should be considered as
CC preliminary data. {ECO:0000313|Ensembl:ENSRNOP00000022324}.
CC -----------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution-NoDerivs License
CC -----------------------------------------------------------------------
DR EMBL; AC115273; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; XP_002725470.1; XM_002725424.5.
DR RefSeq; XP_002728649.1; XM_002728603.5.
DR UniGene; Rn.140797; -.
DR STRING; 10116.ENSRNOP00000022324; -.
DR PaxDb; F1LN08; -.
DR Ensembl; ENSRNOT00000022324; ENSRNOP00000022324; ENSRNOG00000016631.
DR GeneID; 307924; -.
DR KEGG; rno:307924; -.
DR CTD; 57247; -.
DR RGD; 1307469; Zfp276.
DR eggNOG; KOG1721; Eukaryota.
DR eggNOG; COG5048; LUCA.
DR GeneTree; ENSGT00530000063153; -.
DR InParanoid; F1LN08; -.
DR OMA; GCDQGHD; -.
DR OrthoDB; EOG091G04WK; -.
DR TreeFam; TF332664; -.
DR Proteomes; UP000002494; Chromosome 19.
DR Bgee; ENSRNOG00000016631; -.
DR Genevisible; F1LN08; RN.
DR GO; GO:0000776; C:kinetochore; IEA:Ensembl.
DR GO; GO:0005634; C:nucleus; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 3.30.40.10; -; 2.
DR InterPro; IPR012934; Znf_AD.
DR InterPro; IPR013087; Znf_C2H2_type.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR Pfam; PF07776; zf-AD; 1.
DR SMART; SM00355; ZnF_C2H2; 5.
DR SUPFAM; SSF57667; SSF57667; 2.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 3.
DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 4.
PE 4: Predicted;
KW Complete proteome {ECO:0000313|Proteomes:UP000002494};
KW Reference proteome {ECO:0000313|Proteomes:UP000002494}.
FT DOMAIN 462 492 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 493 520 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 521 548 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 551 579 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 433 456 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 521 548 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 553 574 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 495 515 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 521 543 ismart:ZnF_C2H2 [T]
FT MYHIT 493 515 ismart:ZnF_C2H2 [T]
FT MYHIT 462 492 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 493 520 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 431 455 ismart:ZnF_C2H2 [T]
FT MYHIT 78 155 ipfam:zf-AD [T]
FT MYHIT 551 574 ismart:ZnF_C2H2 [T]
FT MYHIT 551 579 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 462 487 ismart:ZnF_C2H2 [T]
SQ SEQUENCE 609 AA; 66839 MW; 686F1DA402D75171 CRC64;
MKRDRLGRFL SPGIARQRGS SGSSCGSGRT RGRPSRTGGS SADGAAPQLS WGSTRSCGDT
GEDGTDEAGA GRTLTMGHCR LCHGKFSSRS LRSISERVPG ETSERLSPGE RVFIRDFQRL
LGVAVHQDPA LPQFVCKNCY TQFYQCHSLL RSFLQRVNVS PAGQRKPCTK VGVQPPTVAE
EGACMADLIT SSPQCLHGLV GWVHEHAVNC GCLPSLQRTL SSEYCGVIQA VWGCDQGHDF
TMDTDSGCRA LLLDSALAVK WGKELAPRLA QSSASDPTGA ASQLCQARET QVGSETKTLP
SVDVALLHSH GDSVGPGLSP YIQPNLAPSE APGQLGEKQV PSSTSDDRVK DEFSDLSEGD
VLSEDDSDKK QTPQSSDESF EPYPEKKVSG KKSEGKEAKR PEEPKIRKKP GPKPGWKKKL
RCEREELPTI YKCPYQGCTA VYRGADGMKK HIKEHHEEVR ERPCPHPGCN KVFMIDRYLQ
RHVKLIHTEV RNYICDECGQ TFKQRKHLLV HQMRHSGAKP LQCEVCGFQC RQRASLKYHM
TKHKAETELD FACDQCGRRF EKAHNLNVHM SMVHPLTQTQ ALPLEAEPPP GPLSLAGTVE
GQAVKPEPT
//
|
