ID D3ZT47_RAT Unreviewed; 822 AA.
AC D3ZT47;
DT 20-APR-2010, integrated into UniProtKB/TrEMBL.
DT 03-APR-2013, sequence version 2.
DT 10-MAY-2017, entry version 44.
DE SubName: Full=Family with sequence similarity 171, member A2 {ECO:0000313|Ensembl:ENSRNOP00000028563};
GN Name=Fam171a2 {ECO:0000313|Ensembl:ENSRNOP00000028563,
GN ECO:0000313|RGD:1307966};
GN Synonyms=RGD1307966 {ECO:0000313|RGD:1307966};
OS Rattus norvegicus (Rat).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
OC Muroidea; Muridae; Murinae; Rattus.
OX NCBI_TaxID=10116 {ECO:0000313|Ensembl:ENSRNOP00000028563, ECO:0000313|Proteomes:UP000002494};
RN [1] {ECO:0000313|Ensembl:ENSRNOP00000028563, ECO:0000313|Proteomes:UP000002494}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000028563,
RC ECO:0000313|Proteomes:UP000002494};
RX PubMed=15057822; DOI=10.1038/nature02426;
RG Rat Genome Sequencing Project Consortium;
RA Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J.,
RA Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G.,
RA Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G.,
RA Morgan M., Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G.,
RA Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S.,
RA Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T.,
RA Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T.,
RA Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A.,
RA Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M.,
RA Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K.,
RA Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S.,
RA Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J.,
RA Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y.,
RA Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A.,
RA Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J.,
RA D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R.,
RA Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A.,
RA Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E.,
RA Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E.,
RA Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J.,
RA Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D.,
RA Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M.,
RA Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O.,
RA Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O.,
RA Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H.,
RA Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S.,
RA Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J.,
RA Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M.,
RA Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E.,
RA Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F.,
RA Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K.,
RA Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S.,
RA Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M.,
RA Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M.,
RA Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A.,
RA Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S.,
RA Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G.,
RA Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H.,
RA Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R.,
RA Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M.,
RA Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H.,
RA Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S.,
RA Collins F.S.;
RT "Genome sequence of the Brown Norway rat yields insights into
RT mammalian evolution.";
RL Nature 428:493-521(2004).
RN [2] {ECO:0000313|Ensembl:ENSRNOP00000028563}
RP IDENTIFICATION.
RC STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000028563};
RG Ensembl;
RL Submitted (JUL-2011) to UniProtKB.
RN [3] {ECO:0000213|PubMed:22673903}
RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX PubMed=22673903;
RA Lundby A., Secher A., Lage K., Nordsborg N.B., Dmytriyev A.,
RA Lundby C., Olsen J.V.;
RT "Quantitative maps of protein phosphorylation sites across 14
RT different rat organs and tissues.";
RL Nat. Commun. 3:876-876(2012).
CC -!- CAUTION: The sequence shown here is derived from an Ensembl
CC automatic analysis pipeline and should be considered as
CC preliminary data. {ECO:0000313|Ensembl:ENSRNOP00000028563}.
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DR EMBL; AC134158; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; XP_002727867.2; XM_002727821.5.
DR STRING; 10116.ENSRNOP00000028563; -.
DR iPTMnet; D3ZT47; -.
DR PhosphoSitePlus; D3ZT47; -.
DR SwissPalm; D3ZT47; -.
DR PaxDb; D3ZT47; -.
DR PeptideAtlas; D3ZT47; -.
DR PRIDE; D3ZT47; -.
DR Ensembl; ENSRNOT00000028563; ENSRNOP00000028563; ENSRNOG00000021041.
DR GeneID; 100361389; -.
DR KEGG; rno:100361389; -.
DR CTD; 284069; -.
DR RGD; 1307966; Fam171a2.
DR eggNOG; ENOG410IEC0; Eukaryota.
DR eggNOG; ENOG410ZP57; LUCA.
DR GeneTree; ENSGT00530000063318; -.
DR InParanoid; D3ZT47; -.
DR OMA; TRATETN; -.
DR OrthoDB; EOG091G01Y7; -.
DR TreeFam; TF331338; -.
DR Proteomes; UP000002494; Chromosome 10.
DR Bgee; ENSRNOG00000021041; -.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR InterPro; IPR018890; Uncharacterised_FAM171.
DR Pfam; PF10577; UPF0560; 1.
PE 1: Evidence at protein level;
KW Complete proteome {ECO:0000313|Proteomes:UP000002494};
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000002494};
KW Signal {ECO:0000256|SAM:SignalP};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT SIGNAL 1 26 {ECO:0000256|SAM:SignalP}.
FT CHAIN 27 822 {ECO:0000256|SAM:SignalP}.
FT /FTId=PRO_5003053213.
FT TRANSMEM 286 304 Helical. {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 316 339 Helical. {ECO:0000256|SAM:Phobius}.
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CC The following FT lines are automated annotations from the MyHits database.
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FT MYHIT 41 820 ipfam:UPF0560 [T]
SQ SEQUENCE 822 AA; 87420 MW; 8E34264431399E59 CRC64;
MPPPSGPGVL ARLLPLLGLL LGGASRAPGK SPPEPPSPQE ILIKVQVYVS GELVPLARAS
VDVFGNRTLL AAGTTDSEGV ATLPLSYRLG TWVLVTAARP GFLTNSVPWR VDKLPLYASV
SLYLLPERPA TLILYEDLVH ILLGSPGARS QPWVQFQRRA ARLPVSSTYN QLWASLTPAS
TQQEMRAFPA FLGTEASSSG NGSWLELIPL TAVSVHLLTG NGTEVPLSGP IHLSLPVPSE
PRALAVGTSI PAWRFDPKSG LWVRNGTGVI RKEGRQLYWT FVSPQLGYWV AAMASPTSGL
VTITSGIQDI GTYHTIFLLT ILAALALLVL ILLCLLIYYC RRRCLKPRQQ HRKLQLSGPS
DNKRDQATSM SQLHLICGGP LEPTSSGDPE APPPGSLHSA FSSSRDLASS RDDFFRAKPR
SASRPAAEPP GARSVEGAGL KGARSVEGPG VLEPSLEEYR RGPAGAAAFL HEAPSPPPSF
DHYLGHKGAA ESKTPDFLLS QSVDQLARPP SLSQPGQLIF CGSIDHLKDN VYRNVMPTLV
IPAHYVRLGG EAGAAGVGDE ATPPEGSAAG PARPFPQPDP QRPLIQGHAG AGGDGGGGEG
WGGGRSAPVS GSVTIPVLFN ESTMAQLNGE LQALTEKKLL ELGVKPHPRA WFVSLDGRSN
SQVRHSYIDL QAGGGGRSTD ASLDSGVDVH EARPARRRPP REERERAQPP APPPPAPPRL
ALSEDTEPSS SESRTGLCSP EDNSLTPLLD EVVAPEGRAA TVPRGRGRSR GDSSRSSASE
LRRDSLTSPE DELGAEVGDE AGDKKSPWQR REERPLMVFN VK
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