MyHits has reached its end of life and no longer provides data or services. Thank you for your support and trust for more than 23 years!
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
- MyHits
| Description | SubName: Full=RCG60016 {ECO:0000313|EMBL:EDM16031.1}; SubName: Full=Zinc finger protein 623 {ECO:0000313|Ensembl:ENSRNOP00000012321}; |
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| MyHits synonyms | D3ZBN5_RAT , D3ZBN5 , F2F9F2FC0EC098B2 |
 Legends: 1, C2H2-type. {ECO:0000259|PROSITE:PS50157}; 2, iprf:ZINC_FINGER_C2H2_2 [T]; 3, ismart:ZnF_C2H2 [T]; 4, ipat:ZINC_FINGER_C2H2_1 [T].
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ID D3ZBN5_RAT Unreviewed; 499 AA.
AC D3ZBN5;
DT 20-APR-2010, integrated into UniProtKB/TrEMBL.
DT 20-APR-2010, sequence version 1.
DT 10-MAY-2017, entry version 60.
DE SubName: Full=RCG60016 {ECO:0000313|EMBL:EDM16031.1};
DE SubName: Full=Zinc finger protein 623 {ECO:0000313|Ensembl:ENSRNOP00000012321};
GN Name=Zfp623 {ECO:0000313|Ensembl:ENSRNOP00000012321,
GN ECO:0000313|RGD:7635192};
GN Synonyms=LOC102547932 {ECO:0000313|RGD:7635192};
GN ORFNames=rCG_60016 {ECO:0000313|EMBL:EDM16031.1};
OS Rattus norvegicus (Rat).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
OC Muroidea; Muridae; Murinae; Rattus.
OX NCBI_TaxID=10116 {ECO:0000313|Ensembl:ENSRNOP00000012321, ECO:0000313|Proteomes:UP000002494};
RN [1] {ECO:0000313|Ensembl:ENSRNOP00000012321, ECO:0000313|Proteomes:UP000002494}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000012321,
RC ECO:0000313|Proteomes:UP000002494};
RX PubMed=15057822; DOI=10.1038/nature02426;
RG Rat Genome Sequencing Project Consortium;
RA Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J.,
RA Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G.,
RA Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G.,
RA Morgan M., Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G.,
RA Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S.,
RA Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T.,
RA Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T.,
RA Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A.,
RA Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M.,
RA Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K.,
RA Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S.,
RA Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J.,
RA Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y.,
RA Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A.,
RA Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J.,
RA D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R.,
RA Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A.,
RA Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E.,
RA Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E.,
RA Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J.,
RA Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D.,
RA Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M.,
RA Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O.,
RA Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O.,
RA Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H.,
RA Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S.,
RA Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J.,
RA Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M.,
RA Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E.,
RA Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F.,
RA Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K.,
RA Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S.,
RA Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M.,
RA Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M.,
RA Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A.,
RA Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S.,
RA Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G.,
RA Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H.,
RA Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R.,
RA Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M.,
RA Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H.,
RA Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S.,
RA Collins F.S.;
RT "Genome sequence of the Brown Norway rat yields insights into
RT mammalian evolution.";
RL Nature 428:493-521(2004).
RN [2] {ECO:0000313|EMBL:EDM16031.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=BN {ECO:0000313|EMBL:EDM16031.1};
RX PubMed=15632090; DOI=10.1101/gr.2889405;
RA Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M.,
RA Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z.,
RA Istrail S., Li P., Sutton G.;
RT "Gene and alternative splicing annotation with AIR.";
RL Genome Res. 15:54-66(2005).
RN [3] {ECO:0000313|EMBL:EDM16031.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=BN {ECO:0000313|EMBL:EDM16031.1};
RA Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H.,
RA Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M.,
RA Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L.,
RA Lu F., Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C.,
RA Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F.;
RL Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|Ensembl:ENSRNOP00000012321}
RP IDENTIFICATION.
RC STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000012321};
RG Ensembl;
RL Submitted (JUL-2011) to UniProtKB.
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DR EMBL; AC126537; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CH473950; EDM16031.1; -; Genomic_DNA.
DR RefSeq; XP_006226192.1; XM_006226130.3.
DR RefSeq; XP_006226193.1; XM_006226131.3.
DR RefSeq; XP_006241966.1; XM_006241904.3.
DR RefSeq; XP_006241967.1; XM_006241905.3.
DR STRING; 10116.ENSRNOP00000012321; -.
DR Ensembl; ENSRNOT00000012321; ENSRNOP00000012321; ENSRNOG00000009302.
DR GeneID; 102547932; -.
DR KEGG; rno:102547932; -.
DR CTD; 78834; -.
DR RGD; 7635192; Zfp623.
DR eggNOG; KOG1721; Eukaryota.
DR eggNOG; COG5048; LUCA.
DR GeneTree; ENSGT00850000132387; -.
DR KO; K09228; -.
DR OMA; HTEVKQY; -.
DR OrthoDB; EOG091G02KC; -.
DR TreeFam; TF337005; -.
DR Proteomes; UP000002494; Chromosome 7.
DR Bgee; ENSRNOG00000009302; -.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR InterPro; IPR013087; Znf_C2H2_type.
DR SMART; SM00355; ZnF_C2H2; 12.
DR SUPFAM; SSF57667; SSF57667; 7.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 12.
DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 13.
PE 4: Predicted;
KW Complete proteome {ECO:0000313|Proteomes:UP000002494};
KW Reference proteome {ECO:0000313|Proteomes:UP000002494}.
FT DOMAIN 91 118 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 119 146 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 147 174 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 175 202 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 203 230 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 231 258 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 259 286 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 287 314 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 315 342 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 343 370 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 371 398 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 399 426 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 427 454 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
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CC The following FT lines are automated annotations from the MyHits database.
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FT MYHIT 119 146 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 147 174 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 427 449 ismart:ZnF_C2H2 [T]
FT MYHIT 399 421 ismart:ZnF_C2H2 [T]
FT MYHIT 399 426 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 147 169 ismart:ZnF_C2H2 [T]
FT MYHIT 175 202 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 259 286 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 401 421 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 373 393 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 231 253 ismart:ZnF_C2H2 [T]
FT MYHIT 233 253 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 119 141 ismart:ZnF_C2H2 [T]
FT MYHIT 205 225 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 91 118 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 121 141 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 259 281 ismart:ZnF_C2H2 [T]
FT MYHIT 315 337 ismart:ZnF_C2H2 [T]
FT MYHIT 371 398 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 345 365 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 371 393 ismart:ZnF_C2H2 [T]
FT MYHIT 315 342 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 147 169 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 203 230 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 429 449 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 289 309 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 343 370 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 287 309 ismart:ZnF_C2H2 [T]
FT MYHIT 343 365 ismart:ZnF_C2H2 [T]
FT MYHIT 175 197 ismart:ZnF_C2H2 [T]
FT MYHIT 261 281 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 203 225 ismart:ZnF_C2H2 [T]
FT MYHIT 317 337 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 427 454 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 287 314 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 231 258 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 177 197 ipat:ZINC_FINGER_C2H2_1 [T]
SQ SEQUENCE 499 AA; 57323 MW; F2F9F2FC0EC098B2 CRC64;
MMSDKLTVLE PSVSESREFH EDRLAQLLEN PETQSLESPS CQDGGFTQMT VAHWKIQTGD
TAPVCSKSGR NPILDSNLLI LQRELIEGET RSCGVGGKNF PFNSDVDPHQ VSHSGEKSYK
CDHCGKGFSQ TSLLTEHQRV HTRDRLCVCN VCGKDFIHYA NLMEHQLVHT GEKPFKCAQC
GKAFCHSSDL LRHQRVHTRE RPFECKECGK GFSQSSLLIR HQRIHTGERP YECNECGKSF
IRSSSLIRHY QIHTEVKQYE CRDCGKAFRH RSDLIEHQRI HTGERPFECH ECGKAFIRSS
KLIQHQRIHT GERPYVCNEC GKRFSQTSNF TQHQRIHTGE KLYECNECGK AFFLSSYLIR
HQKIHTGERV YECKECGKAF LQKAHLTEHQ KIHTGDRPFE CKDCGKAFIQ SSKLLLHQIV
HTGEKPYVCS YCGKGFIQRS NFLQHQKMHT EEKLYKYSEH GKDLAPPPDL VPQEDLSLSE
TSVHLGETAT DQERCGENF
//
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