ID D3Z916_RAT Unreviewed; 444 AA.
AC D3Z916;
DT 20-APR-2010, integrated into UniProtKB/TrEMBL.
DT 20-APR-2010, sequence version 1.
DT 10-MAY-2017, entry version 56.
DE SubName: Full=Family with sequence similarity 188, member A {ECO:0000313|Ensembl:ENSRNOP00000022986};
DE SubName: Full=Similar to RIKEN cDNA 2310047O13 (Predicted) {ECO:0000313|EMBL:EDL78709.1};
GN Name=Fam188a {ECO:0000313|Ensembl:ENSRNOP00000022986,
GN ECO:0000313|RGD:1309605};
GN Synonyms=RGD1309605_predicted {ECO:0000313|EMBL:EDL78709.1};
GN ORFNames=rCG_55819 {ECO:0000313|EMBL:EDL78709.1};
OS Rattus norvegicus (Rat).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
OC Muroidea; Muridae; Murinae; Rattus.
OX NCBI_TaxID=10116 {ECO:0000313|Ensembl:ENSRNOP00000022986, ECO:0000313|Proteomes:UP000002494};
RN [1] {ECO:0000313|Ensembl:ENSRNOP00000022986, ECO:0000313|Proteomes:UP000002494}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000022986,
RC ECO:0000313|Proteomes:UP000002494};
RX PubMed=15057822; DOI=10.1038/nature02426;
RG Rat Genome Sequencing Project Consortium;
RA Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J.,
RA Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G.,
RA Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G.,
RA Morgan M., Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G.,
RA Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S.,
RA Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T.,
RA Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T.,
RA Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A.,
RA Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M.,
RA Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K.,
RA Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S.,
RA Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J.,
RA Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y.,
RA Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A.,
RA Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J.,
RA D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R.,
RA Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A.,
RA Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E.,
RA Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E.,
RA Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J.,
RA Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D.,
RA Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M.,
RA Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O.,
RA Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O.,
RA Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H.,
RA Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S.,
RA Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J.,
RA Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M.,
RA Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E.,
RA Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F.,
RA Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K.,
RA Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S.,
RA Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M.,
RA Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M.,
RA Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A.,
RA Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S.,
RA Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G.,
RA Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H.,
RA Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R.,
RA Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M.,
RA Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H.,
RA Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S.,
RA Collins F.S.;
RT "Genome sequence of the Brown Norway rat yields insights into
RT mammalian evolution.";
RL Nature 428:493-521(2004).
RN [2] {ECO:0000313|EMBL:EDL78709.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=BN {ECO:0000313|EMBL:EDL78709.1};
RX PubMed=15632090; DOI=10.1101/gr.2889405;
RA Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M.,
RA Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z.,
RA Istrail S., Li P., Sutton G.;
RT "Gene and alternative splicing annotation with AIR.";
RL Genome Res. 15:54-66(2005).
RN [3] {ECO:0000313|EMBL:EDL78709.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=BN {ECO:0000313|EMBL:EDL78709.1};
RA Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H.,
RA Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M.,
RA Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L.,
RA Lu F., Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C.,
RA Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F.;
RL Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|Ensembl:ENSRNOP00000022986}
RP IDENTIFICATION.
RC STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000022986};
RG Ensembl;
RL Submitted (JUL-2011) to UniProtKB.
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DR EMBL; AABR07028664; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AABR07028665; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CH473990; EDL78709.1; -; Genomic_DNA.
DR RefSeq; NP_001099592.1; NM_001106122.1.
DR UniGene; Rn.106046; -.
DR STRING; 10116.ENSRNOP00000022986; -.
DR Ensembl; ENSRNOT00000022986; ENSRNOP00000022986; ENSRNOG00000016955.
DR GeneID; 291320; -.
DR KEGG; rno:291320; -.
DR CTD; 80013; -.
DR RGD; 1309605; Fam188a.
DR eggNOG; KOG2871; Eukaryota.
DR eggNOG; ENOG410XSGV; LUCA.
DR GeneTree; ENSGT00530000063283; -.
DR OMA; YGQLAHT; -.
DR OrthoDB; EOG091G0TF1; -.
DR TreeFam; TF323996; -.
DR Proteomes; UP000002494; Chromosome 17.
DR Bgee; ENSRNOG00000016955; -.
DR GO; GO:0031965; C:nuclear membrane; IEA:Ensembl.
DR GO; GO:0005654; C:nucleoplasm; IEA:Ensembl.
DR GO; GO:0016807; F:cysteine-type carboxypeptidase activity; IEA:Ensembl.
DR GO; GO:1990380; F:Lys48-specific deubiquitinase activity; IEA:Ensembl.
DR InterPro; IPR025257; DUF4205.
DR InterPro; IPR011992; EF-hand-dom_pair.
DR Pfam; PF13898; DUF4205; 1.
DR SMART; SM01174; DUF4205; 1.
DR SUPFAM; SSF47473; SSF47473; 1.
PE 1: Evidence at protein level;
KW Complete proteome {ECO:0000313|Proteomes:UP000002494};
KW Proteomics identification {ECO:0000213|PeptideAtlas:D3Z916};
KW Reference proteome {ECO:0000313|Proteomes:UP000002494}.
FT DOMAIN 9 351 DUF4205. {ECO:0000259|SMART:SM01174}.
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CC The following FT lines are automated annotations from the MyHits database.
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FT MYHIT 28 299 ipfam:DUF4205 [T]
FT MYHIT 9 351 ismart:DUF4205 [T]
SQ SEQUENCE 444 AA; 49502 MW; 10D0E7C31AFC1FDD CRC64;
MSEVTKELLE LVWGTKSSPG LSDTIFCRWT QGFVFSDSEG SALEQFEGGP CAVIAPVQAF
LLKKLLFSSE KSSWRDCSED EQKELLCHTL CDILESACDS SGSYCMVSWL RGRTTEDAAR
ISGSPAQSSC QVGHSSALAV EELGFERFHA LIQKRSFRTV SELKDAVLDQ YSMWGNKFGV
LLFLYSVLLT KGIENIKNSI EDANEPLIDP VYGHGSQSLI NLLLTGHAVS NVWDGDRECS
GMQLLGIHEQ ATVGFLTLME ALRYCKVGSY LKSPKFPIWI VGSETHLTVF FAKDMALVAP
EAPSEQARRV FQTYDPEDNG FIADTLLEDV MKALDLVSDP EYINLMKNKL DPEGLGIILL
GPFLQEFFPD QGSSGPESFT VYHYNGLKQS NYNEKVMYVE GTAVVMGFED PMLQTDDTPI
KRCLQTKWPY IELLWTTDRS PSLN
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