Entry euk:CRPM2_ARATH

ID   CRPM2_ARATH             Reviewed;         203 AA.
AC   Q9SVL6;
DT   28-NOV-2012, integrated into UniProtKB/Swiss-Prot.
DT   01-MAY-2000, sequence version 1.
DT   12-APR-2017, entry version 82.
DE   RecName: Full=Cold-regulated 413 plasma membrane protein 2;
DE            Short=AtCOR413-PM2;
GN   Name=COR413PM2; OrderedLocusNames=At3g50830; ORFNames=F18B3.110;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
OC   Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
OC   Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA], GENE FAMILY, AND NOMENCLATURE.
RC   STRAIN=cv. Columbia;
RX   PubMed=12746512; DOI=10.1104/pp.102.015255;
RA   Breton G., Danyluk J., Charron J.-B.F., Sarhan F.;
RT   "Expression profiling and bioinformatic analyses of a novel stress-
RT   regulated multispanning transmembrane protein family from cereals and
RT   Arabidopsis.";
RL   Plant Physiol. 132:64-74(2003).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130713; DOI=10.1038/35048706;
RA   Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M.,
RA   Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B.,
RA   Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P.,
RA   De Simone V., Choisne N., Artiguenave F., Robert C., Brottier P.,
RA   Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F.,
RA   Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V.,
RA   Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S.,
RA   Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G.,
RA   Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B.,
RA   Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G.,
RA   Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J.,
RA   Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D.,
RA   Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA   de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA   Monfort A., Argiriou A., Flores M., Liguori R., Vitale D.,
RA   Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W.,
RA   Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J.,
RA   Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P.,
RA   Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S.,
RA   Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V.,
RA   Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C.,
RA   Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E.,
RA   Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y.,
RA   Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A.,
RA   Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA   Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT   "Sequence and analysis of chromosome 3 of the plant Arabidopsis
RT   thaliana.";
RL   Nature 408:820-822(2000).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RG   The Arabidopsis Information Portal (Araport);
RL   Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=14593172; DOI=10.1126/science.1088305;
RA   Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
RA   Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
RA   Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
RA   Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
RA   Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
RA   Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
RA   Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
RA   Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
RA   Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
RA   Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
RA   Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
RA   Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   "Empirical analysis of transcriptional activity in the Arabidopsis
RT   genome.";
RL   Science 302:842-846(2003).
CC   -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000250}; Multi-pass
CC       membrane protein {ECO:0000250}.
CC   -!- SIMILARITY: Belongs to the Cold-regulated 413 protein family.
CC       {ECO:0000305}.
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DR   EMBL; AF283005; AAG13394.1; -; mRNA.
DR   EMBL; AL049862; CAB42912.1; -; Genomic_DNA.
DR   EMBL; CP002686; AEE78715.1; -; Genomic_DNA.
DR   EMBL; AF360305; AAK26015.1; -; mRNA.
DR   EMBL; AY056356; AAL07242.1; -; mRNA.
DR   PIR; T08404; T08404.
DR   RefSeq; NP_190652.1; NM_114943.5.
DR   UniGene; At.22366; -.
DR   BioGrid; 9565; 3.
DR   IntAct; Q9SVL6; 3.
DR   STRING; 3702.AT3G50830.1; -.
DR   PaxDb; Q9SVL6; -.
DR   EnsemblPlants; AT3G50830.1; AT3G50830.1; AT3G50830.
DR   GeneID; 824247; -.
DR   Gramene; AT3G50830.1; AT3G50830.1; AT3G50830.
DR   KEGG; ath:AT3G50830; -.
DR   Araport; AT3G50830; -.
DR   TAIR; locus:2077982; AT3G50830.
DR   eggNOG; ENOG410IVQJ; Eukaryota.
DR   eggNOG; ENOG4111SCF; LUCA.
DR   HOGENOM; HOG000239742; -.
DR   InParanoid; Q9SVL6; -.
DR   OMA; RMDYLAM; -.
DR   OrthoDB; EOG09360RWR; -.
DR   PhylomeDB; Q9SVL6; -.
DR   PRO; PR:Q9SVL6; -.
DR   Proteomes; UP000006548; Chromosome 3.
DR   ExpressionAtlas; Q9SVL6; baseline and differential.
DR   Genevisible; Q9SVL6; AT.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   GO; GO:0005886; C:plasma membrane; ISS:TAIR.
DR   GO; GO:0005774; C:vacuolar membrane; IDA:TAIR.
DR   InterPro; IPR008892; COR413.
DR   Pfam; PF05562; WCOR413; 1.
PE   2: Evidence at transcript level;
KW   Cell membrane; Complete proteome; Membrane; Reference proteome;
KW   Transmembrane; Transmembrane helix.
FT   CHAIN         1    203       Cold-regulated 413 plasma membrane
FT                                protein 2.
FT                                /FTId=PRO_0000420441.
FT   TOPO_DOM      1     43       Extracellular. {ECO:0000255}.
FT   TRANSMEM     44     64       Helical. {ECO:0000255}.
FT   TOPO_DOM     65     74       Cytoplasmic. {ECO:0000255}.
FT   TRANSMEM     75     95       Helical. {ECO:0000255}.
FT   TOPO_DOM     96     98       Extracellular. {ECO:0000255}.
FT   TRANSMEM     99    119       Helical. {ECO:0000255}.
FT   TOPO_DOM    120    120       Cytoplasmic. {ECO:0000255}.
FT   TRANSMEM    121    141       Helical. {ECO:0000255}.
FT   TOPO_DOM    142    144       Extracellular. {ECO:0000255}.
FT   TRANSMEM    145    165       Helical. {ECO:0000255}.
FT   TOPO_DOM    166    179       Cytoplasmic. {ECO:0000255}.
FT   TRANSMEM    180    200       Helical. {ECO:0000255}.
FT   TOPO_DOM    201    203       Extracellular. {ECO:0000255}.
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CC   The following FT lines are automated annotations from the MyHits database.
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FT   MYHIT        10    190       ipfam:WCOR413 [T]
SQ   SEQUENCE   203 AA;  22754 MW;  26D350995A3D6D0D CRC64;
     MGRMDYLAMK TDDVDTVALV NSDMEELKVA AKKLFSDVSK LGGLGFGVSF LKFLASFAAI
     YLLILDRTNW KTKMLTSLLI PYIFLSLPSV IFNFLSGDVG KWIAFVAVVL RLFFPKHFPD
     WLEMPGSLIL LLVVSPHFLA HHIRGTWIGT VISLFIGCYL LQEHIRASGG FRNSFTQPRG
     VSNTLGIILL LVYPVWALIV RVM
//