Entry euk:CRIM1_ARATH

ID   CRIM1_ARATH             Reviewed;         225 AA.
AC   Q94AL8; Q9C7R2;
DT   28-NOV-2012, integrated into UniProtKB/Swiss-Prot.
DT   01-DEC-2001, sequence version 1.
DT   12-APR-2017, entry version 79.
DE   RecName: Full=Cold-regulated 413 inner membrane protein 1, chloroplastic;
DE            Short=AtCOR413-IM1;
DE   AltName: Full=Cold-regulated 413 thylakoid membrane 1;
DE            Short=AtCOR413-TM1;
DE   Flags: Precursor;
GN   Name=COR413IM1; Synonyms=COR413TM1, COR414TM1;
GN   OrderedLocusNames=At1g29395; ORFNames=F15D2.29;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
OC   Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
OC   Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130712; DOI=10.1038/35048500;
RA   Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S.,
RA   White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y.,
RA   Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W.,
RA   Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K.,
RA   Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y.,
RA   Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L.,
RA   Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E.,
RA   Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B.,
RA   Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P.,
RA   Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A.,
RA   Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I.,
RA   Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D.,
RA   Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M.,
RA   Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA   Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M.,
RA   Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT   "Sequence and analysis of chromosome 1 of the plant Arabidopsis
RT   thaliana.";
RL   Nature 408:816-820(2000).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RG   The Arabidopsis Information Portal (Araport);
RL   Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11910074; DOI=10.1126/science.1071006;
RA   Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA   Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M.,
RA   Hayashizaki Y., Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T.,
RA   Shibata K., Shinagawa A., Shinozaki K.;
RT   "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL   Science 296:141-145(2002).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=14593172; DOI=10.1126/science.1088305;
RA   Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
RA   Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
RA   Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
RA   Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
RA   Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
RA   Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
RA   Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
RA   Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
RA   Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
RA   Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
RA   Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
RA   Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   "Empirical analysis of transcriptional activity in the Arabidopsis
RT   genome.";
RL   Science 302:842-846(2003).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA   Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA   Feldmann K.A.;
RT   "Full-length cDNA from Arabidopsis thaliana.";
RL   Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN   [6]
RP   PROTEIN SEQUENCE OF 77-83, TRANSIT PEPTIDE CLEAVAGE SITE, TOPOLOGY,
RP   SUBCELLULAR LOCATION, AND INDUCTION BY COLD.
RX   PubMed=18643950; DOI=10.1111/j.1365-3040.2008.01854.x;
RA   Okawa K., Nakayama K., Kakizaki T., Yamashita T., Inaba T.;
RT   "Identification and characterization of Cor413im proteins as novel
RT   components of the chloroplast inner envelope.";
RL   Plant Cell Environ. 31:1470-1483(2008).
RN   [7]
RP   INDUCTION BY ABSCISIC ACID; FREEZING AND DROUGHT, GENE FAMILY, AND
RP   NOMENCLATURE.
RX   PubMed=12746512; DOI=10.1104/pp.102.015255;
RA   Breton G., Danyluk J., Charron J.-B.F., Sarhan F.;
RT   "Expression profiling and bioinformatic analyses of a novel stress-
RT   regulated multispanning transmembrane protein family from cereals and
RT   Arabidopsis.";
RL   Plant Physiol. 132:64-74(2003).
CC   -!- SUBCELLULAR LOCATION: Plastid, chloroplast inner membrane
CC       {ECO:0000269|PubMed:18643950}; Multi-pass membrane protein
CC       {ECO:0000269|PubMed:18643950}.
CC   -!- INDUCTION: Accumulates in response to abscisic acid (ABA), cold,
CC       freezing and drought treatments. {ECO:0000269|PubMed:12746512,
CC       ECO:0000269|PubMed:18643950}.
CC   -!- SIMILARITY: Belongs to the Cold-regulated 413 protein family.
CC       {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAG51739.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR   EMBL; AC068667; AAG51739.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; CP002684; AEE31081.1; -; Genomic_DNA.
DR   EMBL; AK118801; BAC43391.1; -; mRNA.
DR   EMBL; AY045942; AAK76616.1; -; mRNA.
DR   EMBL; AY133821; AAM91755.1; -; mRNA.
DR   EMBL; AY087022; AAM64583.1; -; mRNA.
DR   PIR; E86416; E86416.
DR   RefSeq; NP_564328.1; NM_102679.6.
DR   UniGene; At.24800; -.
DR   UniGene; At.71312; -.
DR   ProteinModelPortal; Q94AL8; -.
DR   STRING; 3702.AT1G29395.1; -.
DR   TCDB; 9.B.166.1.1; the chloroplastic cold-regulated 413 inner membrane protein 1, cor413im1 (cor413im1) family.
DR   PaxDb; Q94AL8; -.
DR   EnsemblPlants; AT1G29395.1; AT1G29395.1; AT1G29395.
DR   GeneID; 839815; -.
DR   Gramene; AT1G29395.1; AT1G29395.1; AT1G29395.
DR   KEGG; ath:AT1G29395; -.
DR   Araport; AT1G29395; -.
DR   TAIR; locus:505006154; AT1G29395.
DR   eggNOG; ENOG410IX87; Eukaryota.
DR   eggNOG; ENOG4111T1X; LUCA.
DR   HOGENOM; HOG000082566; -.
DR   InParanoid; Q94AL8; -.
DR   OMA; PSSIISW; -.
DR   OrthoDB; EOG09360R7S; -.
DR   PhylomeDB; Q94AL8; -.
DR   PRO; PR:Q94AL8; -.
DR   Proteomes; UP000006548; Chromosome 1.
DR   ExpressionAtlas; Q94AL8; baseline and differential.
DR   Genevisible; Q94AL8; AT.
DR   GO; GO:0009507; C:chloroplast; IDA:TAIR.
DR   GO; GO:0009941; C:chloroplast envelope; IDA:TAIR.
DR   GO; GO:0009535; C:chloroplast thylakoid membrane; IDA:TAIR.
DR   GO; GO:0031357; C:integral component of chloroplast inner membrane; IDA:TAIR.
DR   GO; GO:0070417; P:cellular response to cold; IEP:TAIR.
DR   GO; GO:0042631; P:cellular response to water deprivation; IEP:TAIR.
DR   GO; GO:0009631; P:cold acclimation; IMP:TAIR.
DR   GO; GO:0009737; P:response to abscisic acid; IEP:TAIR.
DR   InterPro; IPR008892; COR413.
DR   Pfam; PF05562; WCOR413; 1.
PE   1: Evidence at protein level;
KW   Chloroplast; Complete proteome; Direct protein sequencing; Membrane;
KW   Plastid; Plastid inner membrane; Reference proteome; Transit peptide;
KW   Transmembrane; Transmembrane helix.
FT   TRANSIT       1     76       Chloroplast.
FT                                {ECO:0000269|PubMed:18643950}.
FT   CHAIN        77    225       Cold-regulated 413 inner membrane protein
FT                                1, chloroplastic.
FT                                /FTId=PRO_0000420444.
FT   TOPO_DOM     77     77       Stromal. {ECO:0000255}.
FT   TRANSMEM     78     98       Helical. {ECO:0000255}.
FT   TOPO_DOM     99    102       Chloroplast intermembrane. {ECO:0000255}.
FT   TRANSMEM    103    123       Helical. {ECO:0000255}.
FT   TOPO_DOM    124    128       Stromal. {ECO:0000255}.
FT   TRANSMEM    129    149       Helical. {ECO:0000255}.
FT   TOPO_DOM    150    151       Chloroplast intermembrane. {ECO:0000255}.
FT   TRANSMEM    152    172       Helical. {ECO:0000255}.
FT   TOPO_DOM    173    175       Stromal. {ECO:0000255}.
FT   TRANSMEM    176    196       Helical. {ECO:0000255}.
FT   TOPO_DOM    197    204       Chloroplast intermembrane. {ECO:0000255}.
FT   TRANSMEM    205    225       Helical. {ECO:0000255}.
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CC   The following FT lines are automated annotations from the MyHits database.
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FT   MYHIT        49    216       ipfam:WCOR413 [T]
SQ   SEQUENCE   225 AA;  24354 MW;  E771DF6EFB04E63E CRC64;
     MASLCLSSSR IVSLHHQKPF LSLKLRSRPS DLSGLGRHTS PVCFNPLRLS GDRQRTATVS
     TRVEKRRKRG SSVVCYAAPI SANSLQWIST ISCLALMLAR GTGIHKSVVV PLFALHAPSS
     IVAWIKGEYG VWAAFLALIA RLFFTFPGEL ELPFIALLLV IVAPYQVMNI RGKQEGAIIA
     IAISGFLAFQ HFSRAGSLEK AYEKGSVLAT VAIIGVTVVS LLLLL
//