MyHits has reached its end of life and no longer provides data or services. Thank you for your support and trust for more than 23 years!
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
- MyHits
| Description | RecName: Full=Transcription factor bHLH139; AltName: Full=Basic helix-loop-helix protein 139; Short=AtbHLH139; Short=bHLH 139; AltName: Full=Transcription factor EN 116; AltName: Full=bHLH transcription factor bHLH139; |
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| MyHits synonyms | BH139_ARATH , Q3E7L7 , 092AB779C68B79FD |
 Legends: 1, bHLH. {ECO:0000255|PROSITE- ProRule:PRU00981}.
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ID BH139_ARATH Reviewed; 223 AA.
AC Q3E7L7;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 08-NOV-2005, sequence version 1.
DT 10-MAY-2017, entry version 77.
DE RecName: Full=Transcription factor bHLH139;
DE AltName: Full=Basic helix-loop-helix protein 139;
DE Short=AtbHLH139;
DE Short=bHLH 139;
DE AltName: Full=Transcription factor EN 116;
DE AltName: Full=bHLH transcription factor bHLH139;
GN Name=BHLH139; Synonyms=EN116; OrderedLocusNames=At5g43175;
GN ORFNames=MMG4;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
OC Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
OC Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9501997; DOI=10.1093/dnares/4.6.401;
RA Nakamura Y., Sato S., Kaneko T., Kotani H., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. III.
RT Sequence features of the regions of 1,191,918 bp covered by seventeen
RT physically assigned P1 clones.";
RL DNA Res. 4:401-414(1997).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RG The Arabidopsis Information Portal (Araport);
RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=12897250; DOI=10.1105/tpc.013839;
RA Toledo-Ortiz G., Huq E., Quail P.H.;
RT "The Arabidopsis basic/helix-loop-helix transcription factor family.";
RL Plant Cell 15:1749-1770(2003).
RN [4]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=14600211; DOI=10.1105/tpc.151140;
RA Bailey P.C., Martin C., Toledo-Ortiz G., Quail P.H., Huq E.,
RA Heim M.A., Jakoby M., Werber M., Weisshaar B.;
RT "Update on the basic helix-loop-helix transcription factor gene family
RT in Arabidopsis thaliana.";
RL Plant Cell 15:2497-2502(2003).
CC -!- SUBUNIT: Homodimer. {ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
CC ProRule:PRU00981}.
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DR EMBL; AB008267; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002688; AED94919.1; -; Genomic_DNA.
DR RefSeq; NP_680385.1; NM_148080.2.
DR UniGene; At.55333; -.
DR ProteinModelPortal; Q3E7L7; -.
DR BioGrid; 19585; 2.
DR STRING; 3702.AT5G43175.1; -.
DR PaxDb; Q3E7L7; -.
DR EnsemblPlants; AT5G43175.1; AT5G43175.1; AT5G43175.
DR GeneID; 834335; -.
DR Gramene; AT5G43175.1; AT5G43175.1; AT5G43175.
DR KEGG; ath:AT5G43175; -.
DR Araport; AT5G43175; -.
DR TAIR; locus:504954900; AT5G43175.
DR eggNOG; ENOG410IXZ6; Eukaryota.
DR eggNOG; ENOG410YM1P; LUCA.
DR HOGENOM; HOG000240244; -.
DR InParanoid; Q3E7L7; -.
DR OMA; MENEAFV; -.
DR OrthoDB; EOG093603GY; -.
DR PhylomeDB; Q3E7L7; -.
DR PRO; PR:Q3E7L7; -.
DR Proteomes; UP000006548; Chromosome 5.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0001046; F:core promoter sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR.
DR GO; GO:0001228; F:transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding; IBA:GO_Central.
DR GO; GO:0006366; P:transcription from RNA polymerase II promoter; IBA:GO_Central.
DR CDD; cd00083; HLH; 1.
DR Gene3D; 4.10.280.10; -; 1.
DR InterPro; IPR011598; bHLH_dom.
DR Pfam; PF00010; HLH; 1.
DR SMART; SM00353; HLH; 1.
DR SUPFAM; SSF47459; SSF47459; 1.
DR PROSITE; PS50888; BHLH; 1.
PE 3: Inferred from homology;
KW Complete proteome; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1 223 Transcription factor bHLH139.
FT /FTId=PRO_0000358819.
FT DOMAIN 138 187 bHLH. {ECO:0000255|PROSITE-
FT ProRule:PRU00981}.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 144 193 ismart:HLH [T]
FT MYHIT 148 188 ipfam:HLH [T]
FT MYHIT 138 187 iprf:BHLH [T]
SQ SEQUENCE 223 AA; 25076 MW; 092AB779C68B79FD CRC64;
MENEAFVDGE LESLLGMFNF DQCSSNESSF CNAPNETDVF SSDDFFPFGT ILQSNYAAVL
DGSNHQTNRN VDSRQDLLKP RKKQKLSSES NLVTEPKTAW RDGQSLSSYN SSDDEKALGL
VSNTSKSLKR KAKANRGIAS DPQSLYARKR RERINDRLKT LQSLVPNGTK VDISTMLEDA
VHYVKFLQLQ IKLLSSEDLW MYAPLAHNGL NMGLHHNLLS RLI
//
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