Entry euk:A9JRG7_DANRE

ID   A9JRG7_DANRE            Unreviewed;       847 AA.
AC   A9JRG7;
DT   05-FEB-2008, integrated into UniProtKB/TrEMBL.
DT   05-FEB-2008, sequence version 1.
DT   10-MAY-2017, entry version 74.
DE   SubName: Full=Zgc:172323 {ECO:0000313|Ensembl:ENSDARP00000069676};
DE   SubName: Full=Zgc:172323 protein {ECO:0000313|EMBL:AAI55654.1};
GN   ORFNames=zgc:172323 {ECO:0000313|EMBL:AAI55654.1,
GN   ECO:0000313|Ensembl:ENSDARP00000069676,
GN   ECO:0000313|ZFIN:ZDB-GENE-080204-113};
OS   Danio rerio (Zebrafish) (Brachydanio rerio).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
OX   NCBI_TaxID=7955 {ECO:0000313|EMBL:AAI55654.1};
RN   [1] {ECO:0000313|EMBL:AAI55654.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   TISSUE=Whole {ECO:0000313|EMBL:AAI55654.1};
RG   NIH - Zebrafish Gene Collection (ZGC) project;
RL   Submitted (DEC-2007) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|Ensembl:ENSDARP00000069676}
RP   IDENTIFICATION.
RC   STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000069676};
RG   Ensembl;
RL   Submitted (FEB-2012) to UniProtKB.
RN   [3] {ECO:0000313|Ensembl:ENSDARP00000069676, ECO:0000313|Proteomes:UP000000437}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000069676,
RC   ECO:0000313|Proteomes:UP000000437};
RX   PubMed=23594743; DOI=10.1038/nature12111;
RA   Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
RA   Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
RA   McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
RA   Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
RA   Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
RA   Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
RA   Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
RA   Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA   Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA   Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA   Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA   Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
RA   Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
RA   Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
RA   Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
RA   Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
RA   Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
RA   Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
RA   Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA   Saunders D., Wallis J., Babbage A., Hammond S.,
RA   Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
RA   Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA   Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA   Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
RA   Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
RA   Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
RA   Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
RA   Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
RA   Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
RA   Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
RA   Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
RA   Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
RA   Stemple D.L.;
RT   "The zebrafish reference genome sequence and its relationship to the
RT   human genome.";
RL   Nature 496:498-503(2013).
CC   -!- SIMILARITY: Belongs to the intermediate filament family.
CC       {ECO:0000256|SAAS:SAAS00680696}.
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DR   EMBL; CR848819; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; BC155653; AAI55654.1; -; mRNA.
DR   RefSeq; NP_001107899.1; NM_001114427.1.
DR   UniGene; Dr.18713; -.
DR   Ensembl; ENSDART00000075191; ENSDARP00000069676; ENSDARG00000053201.
DR   GeneID; 564165; -.
DR   KEGG; dre:564165; -.
DR   ZFIN; ZDB-GENE-080204-113; zgc:172323.
DR   eggNOG; ENOG410JAWE; Eukaryota.
DR   eggNOG; ENOG410YATS; LUCA.
DR   GeneTree; ENSGT00830000128228; -.
DR   HOGENOM; HOG000207709; -.
DR   HOVERGEN; HBG013015; -.
DR   TreeFam; TF317854; -.
DR   Proteomes; UP000000437; Chromosome 16.
DR   Bgee; ENSDARG00000053201; -.
DR   GO; GO:0005882; C:intermediate filament; ISS:ZFIN.
DR   GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR   InterPro; IPR001664; IF.
DR   InterPro; IPR006821; Intermed_filament_DNA-bd.
DR   PANTHER; PTHR23239; PTHR23239; 1.
DR   Pfam; PF00038; Filament; 1.
DR   Pfam; PF04732; Filament_head; 1.
DR   SMART; SM01391; Filament; 1.
PE   1: Evidence at protein level;
KW   Coiled coil {ECO:0000256|SAAS:SAAS00680713, ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000000437};
KW   Intermediate filament {ECO:0000256|SAAS:SAAS00680717};
KW   Proteomics identification {ECO:0000213|PeptideAtlas:A9JRG7};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000437}.
FT   DOMAIN        7    107       Filament_head.
FT                                {ECO:0000259|Pfam:PF04732}.
FT   COILED      113    147       {ECO:0000256|SAM:Coils}.
FT   COILED      218    252       {ECO:0000256|SAM:Coils}.
FT   COILED      324    390       {ECO:0000256|SAM:Coils}.
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CC   The following FT lines are automated annotations from the MyHits database.
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FT   MYHIT       108    418       ismart:Filament [T]
FT   MYHIT         7    107       ipfam:Filament_head [T]
FT   MYHIT       108    418       ipfam:Filament [T]
SQ   SEQUENCE   847 AA;  85469 MW;  97AFB5B9385FB313 CRC64;
     MSRSPERISS YRRHFEDSSS SSYQVRVSSP SPVRRDAGRC RSASYTRSNA MAVSNSRAVG
     RRTISTSRSQ PHLNGVGMGA ICLSGGGPGA DLDQAAAENR EFLSTRTSEK QEMILLNDRL
     AAYIEKVRSL EQQNKLLETE IEVLQNRFLK PTGLRLLYEE QLKELMRLAD QMRVQRDIAI
     AAKDAMAGQL EIIKVKYEEA LEMRKKAELD IEAFRPDVDA ATSARIALEK QLENLEVELE
     FLRRVHKQEI EELMKQIYAA HASAMDAYSL PDLSNALKQI QHQYDDIAAK NLQEMDSWYK
     NKFDDLNNKT SKHVDQVRHV REGIASAKKD IQNKERDMDS MNTKNEALEA QIRDTQDKYR
     KELEDLQARI EALQLELKSS KQRTALLLRE YQDLLNVKMS LEIEITTYRK LIEGEDSRLT
     SMVQSMQTMT LMSGSTSVHT VAAGAANRGG RGLAGGLGGD VGLEFAGGLG GPATGLERGV
     GRGLDGSATV LGESVGGDAA RGVGGGPTTV LGGHVDGGLG GGIGSGPAIG LGGGVGSGPA
     TGFAGGVGGD PAKGLPGGVG GGPATGLGGG VGGDPAKGLP GGVGGGPATG LTGGVGGDPG
     KGLSDVGGVP ATSLAGGVGG DPAKGLPGGV GGGPATGLAG GVGVDPAKGL PGGVSGGPAS
     GLAGGVGGDT AKGLPGGVGG GPATGLAGGV GGVPVTGLAG GVGGDPSKGL PGGVGGGPAS
     GLAGGVGGDF AKGFEGALGG SSTTGLGGGD PAKGLVGGVG GGSATSLVGG TSSGLGAGTG
     VAGGFINGVT GGVSGIGTTV DYTEEQAVEM TERKTVLIRT FKTEDNILES STQQKSYCIS
     GAASEEE
//