ID A0A1D6JA77_MAIZE Unreviewed; 1501 AA.
AC A0A1D6JA77;
DT 30-NOV-2016, integrated into UniProtKB/TrEMBL.
DT 30-NOV-2016, sequence version 1.
DT 10-MAY-2017, entry version 6.
DE SubName: Full=Dicer-like 103 {ECO:0000313|EMBL:AQK44768.1};
GN ORFNames=ZEAMMB73_Zm00001d025830 {ECO:0000313|EMBL:AQK44768.1};
OS Zea mays (Maize).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae;
OC Zea.
OX NCBI_TaxID=4577 {ECO:0000313|EnsemblPlants:Zm00001d025830_T072, ECO:0000313|Proteomes:UP000007305};
RN [1] {ECO:0000313|Proteomes:UP000007305}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305};
RX PubMed=19965430; DOI=10.1126/science.1178534;
RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S.,
RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D.,
RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K.,
RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K.,
RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M.,
RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M.,
RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K.,
RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J.,
RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S.,
RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K.,
RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S.,
RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M.,
RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H.,
RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C.,
RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T.,
RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L.,
RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P.,
RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A.,
RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C.,
RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y.,
RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z.,
RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D.,
RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C.,
RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M.,
RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S.,
RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G.,
RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R.,
RA Wing R.A., Wilson R.K.;
RT "The B73 maize genome: complexity, diversity, and dynamics.";
RL Science 326:1112-1115(2009).
RN [2] {ECO:0000313|EMBL:AQK44768.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Seedling {ECO:0000313|EMBL:AQK44768.1};
RG Maize Genome Sequencing Project;
RA Ware D.;
RT "Update maize B73 reference genome by single molecule sequencing
RT technologies.";
RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:Zm00001d025830_T072}
RP IDENTIFICATION.
RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d025830_T072};
RG EnsemblPlants;
RL Submitted (OCT-2016) to UniProtKB.
CC -!- SIMILARITY: Belongs to the helicase family. Dicer subfamily.
CC {ECO:0000256|PROSITE-ProRule:PRU00657}.
CC -----------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution-NoDerivs License
CC -----------------------------------------------------------------------
DR EMBL; CM000786; AQK44768.1; -; Genomic_DNA.
DR EnsemblPlants; Zm00001d025830_T072; Zm00001d025830_T072; Zm00001d025830.
DR Gramene; Zm00001d025830_T072; Zm00001d025830_T072; Zm00001d025830.
DR Proteomes; UP000007305; Chromosome 10.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0004525; F:ribonuclease III activity; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006396; P:RNA processing; IEA:InterPro.
DR CDD; cd00593; RIBOc; 2.
DR Gene3D; 1.10.1520.10; -; 2.
DR InterPro; IPR005034; Dicer_dimerisation_dom.
DR InterPro; IPR014720; dsRBD_dom.
DR InterPro; IPR006935; Helicase/UvrB_N.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR003100; PAZ_dom.
DR InterPro; IPR000999; RNase_III_dom.
DR Pfam; PF03368; Dicer_dimer; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF02170; PAZ; 1.
DR Pfam; PF04851; ResIII; 1.
DR Pfam; PF00636; Ribonuclease_3; 2.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00949; PAZ; 1.
DR SMART; SM00535; RIBOc; 2.
DR SUPFAM; SSF52540; SSF52540; 2.
DR SUPFAM; SSF69065; SSF69065; 3.
DR PROSITE; PS51327; DICER_DSRBF; 1.
DR PROSITE; PS50137; DS_RBD; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS50821; PAZ; 1.
DR PROSITE; PS00517; RNASE_3_1; 1.
DR PROSITE; PS50142; RNASE_3_2; 2.
PE 3: Inferred from homology;
KW Complete proteome {ECO:0000313|Proteomes:UP000007305};
KW Reference proteome {ECO:0000313|Proteomes:UP000007305};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00657}.
FT DOMAIN 32 190 Helicase ATP-binding.
FT {ECO:0000259|PROSITE:PS51192}.
FT DOMAIN 359 521 Helicase C-terminal.
FT {ECO:0000259|PROSITE:PS51194}.
FT DOMAIN 544 634 Dicer dsRNA-binding fold.
FT {ECO:0000259|PROSITE:PS51327}.
FT DOMAIN 872 936 PAZ. {ECO:0000259|PROSITE:PS50821}.
FT DOMAIN 953 1131 RNase III. {ECO:0000259|PROSITE:PS50142}.
FT DOMAIN 1172 1316 RNase III. {ECO:0000259|PROSITE:PS50142}.
FT DOMAIN 1342 1409 DRBM (double-stranded RNA-binding).
FT {ECO:0000259|PROSITE:PS50137}.
FT NON_TER 1501 1501 {ECO:0000313|EMBL:AQK44768.1}.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 1207 1316 ipfam:Ribonuclease_3 [T]
FT MYHIT 544 634 iprf:DICER_DSRBF [T]
FT MYHIT 1172 1316 iprf:RNASE_3_2 [T]
FT MYHIT 360 478 ipfam:Helicase_C [T]
FT MYHIT 21 236 ismart:DEXDc [T]
FT MYHIT 872 936 iprf:PAZ [T]
FT MYHIT 953 1131 iprf:RNASE_3_2 [T]
FT MYHIT 544 627 ipfam:Dicer_dimer [T]
FT MYHIT 835 958 ipfam:PAZ [T]
FT MYHIT 397 480 ismart:HELICc [T]
FT MYHIT 1001 1131 ipfam:Ribonuclease_3 [T]
FT MYHIT 1207 1215 ipat:RNASE_3_1 [T]
FT MYHIT 1342 1409 iprf:DS_RBD [T]
FT MYHIT 359 521 iprf:HELICASE_CTER [T]
FT MYHIT 32 190 iprf:HELICASE_ATP_BIND_1 [T]
FT MYHIT 36 190 ipfam:ResIII [T]
FT MYHIT 983 1151 ismart:RIBOc [T]
FT MYHIT 811 962 ismart:PAZ [T]
FT MYHIT 1187 1339 ismart:RIBOc [T]
SQ SEQUENCE 1501 AA; 170360 MW; 96AA03C34A8ED8E0 CRC64;
MSEDEAESSS SGAAASEPKD PRTIARKYQL DLCKRAVDEN IIVYLGTGCG KTHIAVLLMY
ELGHLIRKPS REVCVFLAPT IPLVRQQAMV IADSTNFKVQ RYYGSGKHSR DHQAWEKEMG
EYEVLVMTPQ ILLHNLRHCF IRMDLIALLI FDECHHAQAQ KRHPYAQIMK EFYNNADKHP
RVFGMTASPI IGKGGSNKLT YTKCINSLEE LLNAKVCSVD NVELESVIAS PKVEVYFYGP
VGHSNLTTAY IKELGGYKFQ SECMLRESVC NFNESLKKLK SLWRLHENLI FCLQEVGLFG
ALQAARTFLS SSSVSLDGKG ADINDYANKA MSLLSRDILE GPDADSFDLE TIEEPFFSKK
FAVLINVLSR YRLEENMKCI VFVKRIIVAR VVVQILQNLK CLDFWRCEFL VGCHSGLRNM
SRDKMSSIIE KFSSGEVNLL VATSVGEEGL DIQTCCLVVR FDLPETVNSF IQSRGRARMS
KSKYVFLLER GNHSQEKLLD DYITGEIIMD KEINLRTSND MFNCLEENIY RVNDTGASIS
TACSVSLLHR YCDNLPRDIF FVPSPSFFFV DDVDGIVCKL ILPPNAAFRQ VNGQPCPSKD
EAKRDACLKA CIKLHELGAL TDFLLPGQGS RKIKVSTTNN SESNKDDDES FREELYEMLI
PAVLRPSRCK LDSSFKLHFY YIEFIPIPAD RRYQMFGLFV INRLPEESEK LDVELHLARA
RIVKAGIKYL GKIEFNKEEM ILAHNFQEMF LKVLLDRSEF TPSYILLGND GALDMDSTFY
LLLPIKQKFY GDNMIDWPAV KRCLSSPAFQ DPMGLSLHDS YLPNESLKLL GGTYNKADVI
GSLVYTPHTD LFFFVDAILD GTNAKSELNG ATYAEHFKQR LHIKLSHPEQ PLLKAKQLFC
LRNLLHNRQL ESTESEAREL MEHFVELPPE LCSLKIIGFS KDMGSSLSLL PSLMYRLENL
LVAIELKDVM SSYFPEASQI SASGILESLT TERCLERISL ERLEVLGDAF LKYVVGRHNF
ISYEGLDEGQ LTRRRSDIVS NSNLYELSIR RNLQVYIRDQ HFEPTQFFAL GRPCKVVCNP
DREATLHPKN IDPDRRENCN LRCTKSHHWL HRKTIADVVE SLLGVFIVEC GFKAAFAFLH
WIGIKVDFEN SAFYRVLDAS STNLSLMNYM NISELEELIG YTFKRKGLLL QAFVHPSFNK
HSGGCYQRME FLGDAVLEYL MTSYLYSAYP DLKPGQLTDL KSLAVNNNSF AYVAVKKSIH
RYLIKDSNYL TTAVNKFANY VNLSSSEKDL LEEPTCPKVL GDIVESCVGA VLLDSGFNLN
HVWKLMLMLL KPILSFCGMH IDPMRELRET CQYNGFDLGL PEPTKYNGEF HVKVEVNING
KMISCTAANR NSKDARKVAA QETLSKLKNY GYKHKRKSLE EILRSTTKKE SELIGYDEEP
INVEDDIDMQ MNNLLINGER TSIQSTAGDN KVDKNDANSG RNNKSNVVMQ NGCLPRGATD
K
//
|
