ID A0A1D6JA73_MAIZE Unreviewed; 1492 AA.
AC A0A1D6JA73;
DT 30-NOV-2016, integrated into UniProtKB/TrEMBL.
DT 30-NOV-2016, sequence version 1.
DT 10-MAY-2017, entry version 6.
DE SubName: Full=Dicer-like 103 {ECO:0000313|EMBL:AQK44764.1};
GN ORFNames=ZEAMMB73_Zm00001d025830 {ECO:0000313|EMBL:AQK44764.1};
OS Zea mays (Maize).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae;
OC Zea.
OX NCBI_TaxID=4577 {ECO:0000313|EnsemblPlants:Zm00001d025830_T068, ECO:0000313|Proteomes:UP000007305};
RN [1] {ECO:0000313|Proteomes:UP000007305}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305};
RX PubMed=19965430; DOI=10.1126/science.1178534;
RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S.,
RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D.,
RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K.,
RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K.,
RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M.,
RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M.,
RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K.,
RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J.,
RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S.,
RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K.,
RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S.,
RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M.,
RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H.,
RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C.,
RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T.,
RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L.,
RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P.,
RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A.,
RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C.,
RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y.,
RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z.,
RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D.,
RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C.,
RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M.,
RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S.,
RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G.,
RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R.,
RA Wing R.A., Wilson R.K.;
RT "The B73 maize genome: complexity, diversity, and dynamics.";
RL Science 326:1112-1115(2009).
RN [2] {ECO:0000313|EMBL:AQK44764.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Seedling {ECO:0000313|EMBL:AQK44764.1};
RG Maize Genome Sequencing Project;
RA Ware D.;
RT "Update maize B73 reference genome by single molecule sequencing
RT technologies.";
RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:Zm00001d025830_T068}
RP IDENTIFICATION.
RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d025830_T068};
RG EnsemblPlants;
RL Submitted (OCT-2016) to UniProtKB.
CC -!- SIMILARITY: Belongs to the helicase family. Dicer subfamily.
CC {ECO:0000256|PROSITE-ProRule:PRU00657}.
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DR EMBL; CM000786; AQK44764.1; -; Genomic_DNA.
DR EnsemblPlants; Zm00001d025830_T068; Zm00001d025830_T068; Zm00001d025830.
DR Gramene; Zm00001d025830_T068; Zm00001d025830_T068; Zm00001d025830.
DR Proteomes; UP000007305; Chromosome 10.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0004525; F:ribonuclease III activity; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006396; P:RNA processing; IEA:InterPro.
DR CDD; cd00593; RIBOc; 2.
DR Gene3D; 1.10.1520.10; -; 2.
DR InterPro; IPR005034; Dicer_dimerisation_dom.
DR InterPro; IPR014720; dsRBD_dom.
DR InterPro; IPR006935; Helicase/UvrB_N.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR003100; PAZ_dom.
DR InterPro; IPR000999; RNase_III_dom.
DR Pfam; PF03368; Dicer_dimer; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF02170; PAZ; 1.
DR Pfam; PF04851; ResIII; 1.
DR Pfam; PF00636; Ribonuclease_3; 2.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00358; DSRM; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00949; PAZ; 1.
DR SMART; SM00535; RIBOc; 2.
DR SUPFAM; SSF52540; SSF52540; 2.
DR SUPFAM; SSF69065; SSF69065; 3.
DR PROSITE; PS51327; DICER_DSRBF; 1.
DR PROSITE; PS50137; DS_RBD; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS50821; PAZ; 1.
DR PROSITE; PS00517; RNASE_3_1; 1.
DR PROSITE; PS50142; RNASE_3_2; 2.
PE 3: Inferred from homology;
KW Complete proteome {ECO:0000313|Proteomes:UP000007305};
KW Reference proteome {ECO:0000313|Proteomes:UP000007305};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00657}.
FT DOMAIN 32 190 Helicase ATP-binding.
FT {ECO:0000259|PROSITE:PS51192}.
FT DOMAIN 359 521 Helicase C-terminal.
FT {ECO:0000259|PROSITE:PS51194}.
FT DOMAIN 544 634 Dicer dsRNA-binding fold.
FT {ECO:0000259|PROSITE:PS51327}.
FT DOMAIN 872 936 PAZ. {ECO:0000259|PROSITE:PS50821}.
FT DOMAIN 953 1131 RNase III. {ECO:0000259|PROSITE:PS50142}.
FT DOMAIN 1172 1292 RNase III. {ECO:0000259|PROSITE:PS50142}.
FT DOMAIN 1405 1481 DRBM (double-stranded RNA-binding).
FT {ECO:0000259|PROSITE:PS50137}.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
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FT MYHIT 1406 1480 ismart:DSRM [T]
FT MYHIT 1187 1355 ismart:RIBOc [T]
FT MYHIT 1001 1131 ipfam:Ribonuclease_3 [T]
FT MYHIT 1405 1481 iprf:DS_RBD [T]
FT MYHIT 32 190 iprf:HELICASE_ATP_BIND_1 [T]
FT MYHIT 21 236 ismart:DEXDc [T]
FT MYHIT 983 1151 ismart:RIBOc [T]
FT MYHIT 360 478 ipfam:Helicase_C [T]
FT MYHIT 1172 1292 iprf:RNASE_3_2 [T]
FT MYHIT 872 936 iprf:PAZ [T]
FT MYHIT 1207 1215 ipat:RNASE_3_1 [T]
FT MYHIT 36 190 ipfam:ResIII [T]
FT MYHIT 359 521 iprf:HELICASE_CTER [T]
FT MYHIT 835 958 ipfam:PAZ [T]
FT MYHIT 1207 1288 ipfam:Ribonuclease_3 [T]
FT MYHIT 544 627 ipfam:Dicer_dimer [T]
FT MYHIT 544 634 iprf:DICER_DSRBF [T]
FT MYHIT 397 480 ismart:HELICc [T]
FT MYHIT 953 1131 iprf:RNASE_3_2 [T]
FT MYHIT 811 962 ismart:PAZ [T]
SQ SEQUENCE 1492 AA; 169873 MW; 22311EE5FBD8F8FF CRC64;
MSEDEAESSS SGAAASEPKD PRTIARKYQL DLCKRAVDEN IIVYLGTGCG KTHIAVLLMY
ELGHLIRKPS REVCVFLAPT IPLVRQQAMV IADSTNFKVQ RYYGSGKHSR DHQAWEKEMG
EYEVLVMTPQ ILLHNLRHCF IRMDLIALLI FDECHHAQAQ KRHPYAQIMK EFYNNADKHP
RVFGMTASPI IGKGGSNKLT YTKCINSLEE LLNAKVCSVD NVELESVIAS PKVEVYFYGP
VGHSNLTTAY IKELGGYKFQ SECMLRESVC NFNESLKKLK SLWRLHENLI FCLQEVGLFG
ALQAARTFLS SSSVSLDGKG ADINDYANKA MSLLSRDILE GPDADSFDLE TIEEPFFSKK
FAVLINVLSR YRLEENMKCI VFVKRIIVAR VVVQILQNLK CLDFWRCEFL VGCHSGLRNM
SRDKMSSIIE KFSSGEVNLL VATSVGEEGL DIQTCCLVVR FDLPETVNSF IQSRGRARMS
KSKYVFLLER GNHSQEKLLD DYITGEIIMD KEINLRTSND MFNCLEENIY RVNDTGASIS
TACSVSLLHR YCDNLPRDIF FVPSPSFFFV DDVDGIVCKL ILPPNAAFRQ VNGQPCPSKD
EAKRDACLKA CIKLHELGAL TDFLLPGQGS RKIKVSTTNN SESNKDDDES FREELYEMLI
PAVLRPSRCK LDSSFKLHFY YIEFIPIPAD RRYQMFGLFV INRLPEESEK LDVELHLARA
RIVKAGIKYL GKIEFNKEEM ILAHNFQEMF LKVLLDRSEF TPSYILLGND GALDMDSTFY
LLLPIKQKFY GDNMIDWPAV KRCLSSPAFQ DPMGLSLHDS YLPNESLKLL GGTYNKADVI
GSLVYTPHTD LFFFVDAILD GTNAKSELNG ATYAEHFKQR LHIKLSHPEQ PLLKAKQLFC
LRNLLHNRQL ESTESEAREL MEHFVELPPE LCSLKIIGFS KDMGSSLSLL PSLMYRLENL
LVAIELKDVM SSYFPEASQI SASGILESLT TERCLERISL ERLEVLGDAF LKYVVGRHNF
ISYEGLDEGQ LTRRRSDIVS NSNLYELSIR RNLQVYIRDQ HFEPTQFFAL GRPCKVVCNP
DREATLHPKN IDPDRRENCN LRCTKSHHWL HRKTIADVVE SLLGVFIVEC GFKAAFAFLH
WIGIKVDFEN SAFYRVLDAS STNLSLMNYM NISELEELIG YTFKRKGLLL QAFVHPSFNK
HSGGCYQRME FLGDAVLEYL MTSYLYSAYP DLKPGQLTDL KSLAVNNNSF AYVAVKKSIH
RYLIKDSNYL TTAVNKFANY VNLSSSEKDL LEEPTCPKNY GYKHKRKSLE EILRSTTKKE
SELIGYDEEP INVEDDIDMQ MNNLLINGER TSIQSTAGDN KVDKNDANSG RNNKSNVVMQ
NGCLPRGATD KINQKEYHGD MVRKTARSFL YELCAANYWK PPEFELCNDE GPSHLRKFTC
KVLIEITGTS VSLLECYSDP KLQKRAAQEH AAEGALWYLK HLGYLPRDEN RF
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