ID A0A1D6JA41_MAIZE Unreviewed; 1418 AA.
AC A0A1D6JA41;
DT 30-NOV-2016, integrated into UniProtKB/TrEMBL.
DT 30-NOV-2016, sequence version 1.
DT 10-MAY-2017, entry version 6.
DE SubName: Full=Dicer-like 103 {ECO:0000313|EMBL:AQK44755.1};
GN ORFNames=ZEAMMB73_Zm00001d025830 {ECO:0000313|EMBL:AQK44755.1};
OS Zea mays (Maize).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae;
OC Zea.
OX NCBI_TaxID=4577 {ECO:0000313|EnsemblPlants:Zm00001d025830_T036, ECO:0000313|Proteomes:UP000007305};
RN [1] {ECO:0000313|Proteomes:UP000007305}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305};
RX PubMed=19965430; DOI=10.1126/science.1178534;
RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S.,
RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D.,
RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K.,
RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K.,
RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M.,
RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M.,
RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K.,
RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J.,
RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S.,
RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K.,
RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S.,
RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M.,
RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H.,
RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C.,
RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T.,
RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L.,
RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P.,
RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A.,
RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C.,
RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y.,
RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z.,
RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D.,
RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C.,
RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M.,
RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S.,
RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G.,
RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R.,
RA Wing R.A., Wilson R.K.;
RT "The B73 maize genome: complexity, diversity, and dynamics.";
RL Science 326:1112-1115(2009).
RN [2] {ECO:0000313|EMBL:AQK44755.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Seedling {ECO:0000313|EMBL:AQK44755.1};
RG Maize Genome Sequencing Project;
RA Ware D.;
RT "Update maize B73 reference genome by single molecule sequencing
RT technologies.";
RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:Zm00001d025830_T036}
RP IDENTIFICATION.
RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d025830_T036};
RG EnsemblPlants;
RL Submitted (OCT-2016) to UniProtKB.
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DR EMBL; CM000786; AQK44755.1; -; Genomic_DNA.
DR EnsemblPlants; Zm00001d025830_T036; Zm00001d025830_T036; Zm00001d025830.
DR Gramene; Zm00001d025830_T036; Zm00001d025830_T036; Zm00001d025830.
DR Proteomes; UP000007305; Chromosome 10.
DR GO; GO:0004525; F:ribonuclease III activity; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006396; P:RNA processing; IEA:InterPro.
DR CDD; cd00593; RIBOc; 2.
DR Gene3D; 1.10.1520.10; -; 2.
DR InterPro; IPR005034; Dicer_dimerisation_dom.
DR InterPro; IPR014720; dsRBD_dom.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR003100; PAZ_dom.
DR InterPro; IPR000999; RNase_III_dom.
DR Pfam; PF03368; Dicer_dimer; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF02170; PAZ; 1.
DR Pfam; PF00636; Ribonuclease_3; 2.
DR SMART; SM00358; DSRM; 2.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00949; PAZ; 1.
DR SMART; SM00535; RIBOc; 2.
DR SUPFAM; SSF52540; SSF52540; 1.
DR SUPFAM; SSF69065; SSF69065; 3.
DR PROSITE; PS51327; DICER_DSRBF; 1.
DR PROSITE; PS50137; DS_RBD; 2.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS50821; PAZ; 1.
DR PROSITE; PS00517; RNASE_3_1; 1.
DR PROSITE; PS50142; RNASE_3_2; 2.
PE 4: Predicted;
KW Complete proteome {ECO:0000313|Proteomes:UP000007305};
KW Reference proteome {ECO:0000313|Proteomes:UP000007305};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00657}.
FT DOMAIN 175 337 Helicase C-terminal.
FT {ECO:0000259|PROSITE:PS51194}.
FT DOMAIN 360 450 Dicer dsRNA-binding fold.
FT {ECO:0000259|PROSITE:PS51327}.
FT DOMAIN 688 752 PAZ. {ECO:0000259|PROSITE:PS50821}.
FT DOMAIN 769 947 RNase III. {ECO:0000259|PROSITE:PS50142}.
FT DOMAIN 988 1132 RNase III. {ECO:0000259|PROSITE:PS50142}.
FT DOMAIN 1158 1225 DRBM (double-stranded RNA-binding).
FT {ECO:0000259|PROSITE:PS50137}.
FT DOMAIN 1331 1407 DRBM (double-stranded RNA-binding).
FT {ECO:0000259|PROSITE:PS50137}.
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CC The following FT lines are automated annotations from the MyHits database.
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FT MYHIT 817 947 ipfam:Ribonuclease_3 [T]
FT MYHIT 1332 1406 ismart:DSRM [T]
FT MYHIT 213 296 ismart:HELICc [T]
FT MYHIT 360 450 iprf:DICER_DSRBF [T]
FT MYHIT 651 774 ipfam:PAZ [T]
FT MYHIT 1331 1407 iprf:DS_RBD [T]
FT MYHIT 769 947 iprf:RNASE_3_2 [T]
FT MYHIT 988 1132 iprf:RNASE_3_2 [T]
FT MYHIT 799 967 ismart:RIBOc [T]
FT MYHIT 176 294 ipfam:Helicase_C [T]
FT MYHIT 175 337 iprf:HELICASE_CTER [T]
FT MYHIT 1023 1132 ipfam:Ribonuclease_3 [T]
FT MYHIT 1158 1225 iprf:DS_RBD [T]
FT MYHIT 688 752 iprf:PAZ [T]
FT MYHIT 1003 1155 ismart:RIBOc [T]
FT MYHIT 1023 1031 ipat:RNASE_3_1 [T]
FT MYHIT 360 443 ipfam:Dicer_dimer [T]
FT MYHIT 627 778 ismart:PAZ [T]
FT MYHIT 1159 1224 ismart:DSRM [T]
SQ SEQUENCE 1418 AA; 161055 MW; E4E9DDF473A13C4F CRC64;
MTASPIIGKG GSNKLTYTKC INSLEELLNA KVCSVDNVEL ESVIASPKVE VYFYGPVGHS
NLTTAYIKEL GGYKFQSECM LRESVCNFNE SLKKLKSLWR LHENLIFCLQ EVGLFGALQA
ARTFLSSSSV SLDGKGADIN DYANKAMSLL SRDILEGPDA DSFDLETIEE PFFSKKFAVL
INVLSRYRLE ENMKCIVFVK RIIVARVVVQ ILQNLKCLDF WRCEFLVGCH SGLRNMSRDK
MSSIIEKFSS GEVNLLVATS VGEEGLDIQT CCLVVRFDLP ETVNSFIQSR GRARMSKSKY
VFLLERGNHS QEKLLDDYIT GEIIMDKEIN LRTSNDMFNC LEENIYRVND TGASISTACS
VSLLHRYCDN LPRDIFFVPS PSFFFVDDVD GIVCKLILPP NAAFRQVNGQ PCPSKDEAKR
DACLKACIKL HELGALTDFL LPGQGSRKIK VSTTNNSESN KDDDESFREE LYEMLIPAVL
RPSRCKLDSS FKLHFYYIEF IPIPADRRYQ MFGLFVINRL PEESEKLDVE LHLARARIVK
AGIKYLGKIE FNKEEMILAH NFQEMFLKVL LDRSEFTPSY ILLGNDGALD MDSTFYLLLP
IKQKFYGDNM IDWPAVKRCL SSPAFQDPMG LSLHDSYLPN ESLKLLGGTY NKADVIGSLV
YTPHTDLFFF VDAILDGTNA KSELNGATYA EHFKQRLHIK LSHPEQPLLK AKQLFCLRNL
LHNRQLESTE SEARELMEHF VELPPELCSL KIIGFSKDMG SSLSLLPSLM YRLENLLVAI
ELKDVMSSYF PEASQISASG ILESLTTERC LERISLERLE VLGDAFLKYV VGRHNFISYE
GLDEGQLTRR RSDIVSNSNL YELSIRRNLQ VYIRDQHFEP TQFFALGRPC KVVCNPDREA
TLHPKNIDPD RRENCNLRCT KSHHWLHRKT IADVVESLLG VFIVECGFKA AFAFLHWIGI
KVDFENSAFY RVLDASSTNL SLMNYMNISE LEELIGYTFK RKGLLLQAFV HPSFNKHSGG
CYQRMEFLGD AVLEYLMTSY LYSAYPDLKP GQLTDLKSLA VNNNSFAYVA VKKSIHRYLI
KDSNYLTTAV NKFANYVNLS SSEKDLLEEP TCPKVLGDIV ESCVGAVLLD SGFNLNHVWK
LMLMLLKPIL SFCGMHIDPM RELRETCQYN GFDLGLPEPT KYNGEFHVKV EVNINGKMIS
CTAANRNSKD ARKVAAQETL SKLKNYGYKH KRKSLEEILR STTKKESELI GYDEEPINVE
DDIDMQMNNL LINGERTSIQ STAGDNKVDK NDANSGRNNK SNVVMQNGCL PRGATDKINQ
KEYHGDMVRK TARSFLYELC AANYWKPPEF ELCNDEGPSH LRKFTCKVLI EITGTSVSLL
ECYSDPKLQK RAAQEHAAEG ALWYLKHLGY LPRDENRF
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