ID A0A1D6JA28_MAIZE Unreviewed; 1484 AA.
AC A0A1D6JA28;
DT 30-NOV-2016, integrated into UniProtKB/TrEMBL.
DT 30-NOV-2016, sequence version 1.
DT 10-MAY-2017, entry version 6.
DE SubName: Full=Dicer-like 103 {ECO:0000313|EMBL:AQK44739.1};
GN ORFNames=ZEAMMB73_Zm00001d025830 {ECO:0000313|EMBL:AQK44739.1};
OS Zea mays (Maize).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae;
OC Zea.
OX NCBI_TaxID=4577 {ECO:0000313|EnsemblPlants:Zm00001d025830_T023, ECO:0000313|Proteomes:UP000007305};
RN [1] {ECO:0000313|Proteomes:UP000007305}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305};
RX PubMed=19965430; DOI=10.1126/science.1178534;
RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S.,
RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D.,
RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K.,
RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K.,
RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M.,
RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M.,
RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K.,
RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J.,
RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S.,
RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K.,
RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S.,
RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M.,
RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H.,
RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C.,
RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T.,
RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L.,
RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P.,
RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A.,
RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C.,
RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y.,
RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z.,
RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D.,
RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C.,
RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M.,
RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S.,
RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G.,
RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R.,
RA Wing R.A., Wilson R.K.;
RT "The B73 maize genome: complexity, diversity, and dynamics.";
RL Science 326:1112-1115(2009).
RN [2] {ECO:0000313|EMBL:AQK44739.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Seedling {ECO:0000313|EMBL:AQK44739.1};
RG Maize Genome Sequencing Project;
RA Ware D.;
RT "Update maize B73 reference genome by single molecule sequencing
RT technologies.";
RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:Zm00001d025830_T023}
RP IDENTIFICATION.
RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d025830_T023};
RG EnsemblPlants;
RL Submitted (OCT-2016) to UniProtKB.
CC -!- SIMILARITY: Belongs to the helicase family. Dicer subfamily.
CC {ECO:0000256|PROSITE-ProRule:PRU00657}.
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DR EMBL; CM000786; AQK44739.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44787.1; -; Genomic_DNA.
DR EnsemblPlants; Zm00001d025830_T023; Zm00001d025830_T023; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T063; Zm00001d025830_T063; Zm00001d025830.
DR Gramene; Zm00001d025830_T023; Zm00001d025830_T023; Zm00001d025830.
DR Gramene; Zm00001d025830_T063; Zm00001d025830_T063; Zm00001d025830.
DR Proteomes; UP000007305; Chromosome 10.
DR GO; GO:0004525; F:ribonuclease III activity; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006396; P:RNA processing; IEA:InterPro.
DR CDD; cd00593; RIBOc; 2.
DR Gene3D; 1.10.1520.10; -; 2.
DR InterPro; IPR005034; Dicer_dimerisation_dom.
DR InterPro; IPR014720; dsRBD_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR003100; PAZ_dom.
DR InterPro; IPR000999; RNase_III_dom.
DR Pfam; PF03368; Dicer_dimer; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF02170; PAZ; 1.
DR Pfam; PF00636; Ribonuclease_3; 2.
DR SMART; SM00358; DSRM; 2.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00949; PAZ; 1.
DR SMART; SM00535; RIBOc; 2.
DR SUPFAM; SSF52540; SSF52540; 2.
DR SUPFAM; SSF69065; SSF69065; 3.
DR PROSITE; PS51327; DICER_DSRBF; 1.
DR PROSITE; PS50137; DS_RBD; 2.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS50821; PAZ; 1.
DR PROSITE; PS00517; RNASE_3_1; 1.
DR PROSITE; PS50142; RNASE_3_2; 2.
PE 3: Inferred from homology;
KW Complete proteome {ECO:0000313|Proteomes:UP000007305};
KW Reference proteome {ECO:0000313|Proteomes:UP000007305};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00657}.
FT DOMAIN 1 72 Helicase ATP-binding.
FT {ECO:0000259|PROSITE:PS51192}.
FT DOMAIN 241 403 Helicase C-terminal.
FT {ECO:0000259|PROSITE:PS51194}.
FT DOMAIN 426 516 Dicer dsRNA-binding fold.
FT {ECO:0000259|PROSITE:PS51327}.
FT DOMAIN 754 818 PAZ. {ECO:0000259|PROSITE:PS50821}.
FT DOMAIN 835 1013 RNase III. {ECO:0000259|PROSITE:PS50142}.
FT DOMAIN 1054 1198 RNase III. {ECO:0000259|PROSITE:PS50142}.
FT DOMAIN 1224 1291 DRBM (double-stranded RNA-binding).
FT {ECO:0000259|PROSITE:PS50137}.
FT DOMAIN 1397 1473 DRBM (double-stranded RNA-binding).
FT {ECO:0000259|PROSITE:PS50137}.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
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FT MYHIT 241 403 iprf:HELICASE_CTER [T]
FT MYHIT 883 1013 ipfam:Ribonuclease_3 [T]
FT MYHIT 426 516 iprf:DICER_DSRBF [T]
FT MYHIT 754 818 iprf:PAZ [T]
FT MYHIT 1 72 iprf:HELICASE_ATP_BIND_1 [T]
FT MYHIT 1224 1291 iprf:DS_RBD [T]
FT MYHIT 1397 1473 iprf:DS_RBD [T]
FT MYHIT 1089 1198 ipfam:Ribonuclease_3 [T]
FT MYHIT 693 844 ismart:PAZ [T]
FT MYHIT 1089 1097 ipat:RNASE_3_1 [T]
FT MYHIT 835 1013 iprf:RNASE_3_2 [T]
FT MYHIT 1398 1472 ismart:DSRM [T]
FT MYHIT 279 362 ismart:HELICc [T]
FT MYHIT 242 360 ipfam:Helicase_C [T]
FT MYHIT 1225 1290 ismart:DSRM [T]
FT MYHIT 865 1033 ismart:RIBOc [T]
FT MYHIT 426 509 ipfam:Dicer_dimer [T]
FT MYHIT 1054 1198 iprf:RNASE_3_2 [T]
FT MYHIT 1069 1221 ismart:RIBOc [T]
FT MYHIT 717 840 ipfam:PAZ [T]
SQ SEQUENCE 1484 AA; 168930 MW; ECAD7C18348C3163 CRC64;
MGEYEVLVMT PQILLHNLRH CFIRMDLIAL LIFDECHHAQ AQKRHPYAQI MKEFYNNADK
HPRVFGMTAS PIIGKGGSNK LTYTKCINSL EELLNAKVCS VDNVELESVI ASPKVEVYFY
GPVGHSNLTT AYIKELGGYK FQSECMLRES VCNFNESLKK LKSLWRLHEN LIFCLQEVGL
FGALQAARTF LSSSSVSLDG KGADINDYAN KAMSLLSRDI LEGPDADSFD LETIEEPFFS
KKFAVLINVL SRYRLEENMK CIVFVKRIIV ARVVVQILQN LKCLDFWRCE FLVGCHSGLR
NMSRDKMSSI IEKFSSGEVN LLVATSVGEE GLDIQTCCLV VRFDLPETVN SFIQSRGRAR
MSKSKYVFLL ERGNHSQEKL LDDYITGEII MDKEINLRTS NDMFNCLEEN IYRVNDTGAS
ISTACSVSLL HRYCDNLPRD IFFVPSPSFF FVDDVDGIVC KLILPPNAAF RQVNGQPCPS
KDEAKRDACL KACIKLHELG ALTDFLLPGQ GSRKIKVSTT NNSESNKDDD ESFREELYEM
LIPAVLRPSR CKLDSSFKLH FYYIEFIPIP ADRRYQMFGL FVINRLPEES EKLDVELHLA
RARIVKAGIK YLGKIEFNKE EMILAHNFQE MFLKVLLDRS EFTPSYILLG NDGALDMDST
FYLLLPIKQK FYGDNMIDWP AVKRCLSSPA FQDPMGLSLH DSYLPNESLK LLGGTYNKAD
VIGSLVYTPH TDLFFFVDAI LDGTNAKSEL NGATYAEHFK QRLHIKLSHP EQPLLKAKQL
FCLRNLLHNR QLESTESEAR ELMEHFVELP PELCSLKIIG FSKDMGSSLS LLPSLMYRLE
NLLVAIELKD VMSSYFPEAS QISASGILES LTTERCLERI SLERLEVLGD AFLKYVVGRH
NFISYEGLDE GQLTRRRSDI VSNSNLYELS IRRNLQVYIR DQHFEPTQFF ALGRPCKVVC
NPDREATLHP KNIDPDRREN CNLRCTKSHH WLHRKTIADV VESLLGVFIV ECGFKAAFAF
LHWIGIKVDF ENSAFYRVLD ASSTNLSLMN YMNISELEEL IGYTFKRKGL LLQAFVHPSF
NKHSGGCYQR MEFLGDAVLE YLMTSYLYSA YPDLKPGQLT DLKSLAVNNN SFAYVAVKKS
IHRYLIKDSN YLTTAVNKFA NYVNLSSSEK DLLEEPTCPK VLGDIVESCV GAVLLDSGFN
LNHVWKLMLM LLKPILSFCG MHIDPMRELR ETCQYNGFDL GLPEPTKYNG EFHVKVEVNI
NGKMISCTAA NRNSKDARKV AAQETLSKLK NYGYKHKRKS LEEILRSTTK KESELIGYDE
EPINVEDDID MQMNNLLING ERTSIQSTAG DNKVDKNDAN SGRNNKSNVV MQNGCLPRGA
TDKINQKEYH GDMVRKTARS FLYELCAANY WKPPEFELCN DEGPSHLRKF TCKVLIEITG
TSVSLLECYS DPKLQKRAAQ EHAAEGALWY LKHLGYLPRD ENRF
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