ID A0A1D6JA16_MAIZE Unreviewed; 1609 AA.
AC A0A1D6JA16;
DT 30-NOV-2016, integrated into UniProtKB/TrEMBL.
DT 30-NOV-2016, sequence version 1.
DT 10-MAY-2017, entry version 6.
DE SubName: Full=Dicer-like 103 {ECO:0000313|EMBL:AQK44759.1};
GN ORFNames=ZEAMMB73_Zm00001d025830 {ECO:0000313|EMBL:AQK44759.1};
OS Zea mays (Maize).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae;
OC Zea.
OX NCBI_TaxID=4577 {ECO:0000313|EnsemblPlants:Zm00001d025830_T011, ECO:0000313|Proteomes:UP000007305};
RN [1] {ECO:0000313|Proteomes:UP000007305}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305};
RX PubMed=19965430; DOI=10.1126/science.1178534;
RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S.,
RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D.,
RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K.,
RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K.,
RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M.,
RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M.,
RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K.,
RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J.,
RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S.,
RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K.,
RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S.,
RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M.,
RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H.,
RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C.,
RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T.,
RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L.,
RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P.,
RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A.,
RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C.,
RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y.,
RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z.,
RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D.,
RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C.,
RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M.,
RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S.,
RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G.,
RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R.,
RA Wing R.A., Wilson R.K.;
RT "The B73 maize genome: complexity, diversity, and dynamics.";
RL Science 326:1112-1115(2009).
RN [2] {ECO:0000313|EMBL:AQK44759.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Seedling {ECO:0000313|EMBL:AQK44759.1};
RG Maize Genome Sequencing Project;
RA Ware D.;
RT "Update maize B73 reference genome by single molecule sequencing
RT technologies.";
RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:Zm00001d025830_T011}
RP IDENTIFICATION.
RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d025830_T011};
RG EnsemblPlants;
RL Submitted (OCT-2016) to UniProtKB.
CC -!- SIMILARITY: Belongs to the helicase family. Dicer subfamily.
CC {ECO:0000256|PROSITE-ProRule:PRU00657}.
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DR EMBL; CM000786; AQK44759.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44765.1; -; Genomic_DNA.
DR EnsemblPlants; Zm00001d025830_T011; Zm00001d025830_T011; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T053; Zm00001d025830_T053; Zm00001d025830.
DR Gramene; Zm00001d025830_T011; Zm00001d025830_T011; Zm00001d025830.
DR Gramene; Zm00001d025830_T053; Zm00001d025830_T053; Zm00001d025830.
DR Proteomes; UP000007305; Chromosome 10.
DR GO; GO:0005634; C:nucleus; IEA:EnsemblPlants.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0004525; F:ribonuclease III activity; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006353; P:DNA-templated transcription, termination; IEA:EnsemblPlants.
DR GO; GO:0010216; P:maintenance of DNA methylation; IEA:EnsemblPlants.
DR GO; GO:0010492; P:maintenance of shoot apical meristem identity; IEA:EnsemblPlants.
DR GO; GO:0009944; P:polarity specification of adaxial/abaxial axis; IEA:EnsemblPlants.
DR GO; GO:0010599; P:production of lsiRNA involved in RNA interference; IEA:EnsemblPlants.
DR GO; GO:0010267; P:production of ta-siRNAs involved in RNA interference; IEA:EnsemblPlants.
DR GO; GO:0048608; P:reproductive structure development; IEA:EnsemblPlants.
DR GO; GO:0051214; P:RNA virus induced gene silencing; IEA:EnsemblPlants.
DR GO; GO:0010050; P:vegetative phase change; IEA:EnsemblPlants.
DR CDD; cd00593; RIBOc; 2.
DR Gene3D; 1.10.1520.10; -; 2.
DR InterPro; IPR005034; Dicer_dimerisation_dom.
DR InterPro; IPR014720; dsRBD_dom.
DR InterPro; IPR006935; Helicase/UvrB_N.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR003100; PAZ_dom.
DR InterPro; IPR000999; RNase_III_dom.
DR Pfam; PF03368; Dicer_dimer; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF02170; PAZ; 1.
DR Pfam; PF04851; ResIII; 1.
DR Pfam; PF00636; Ribonuclease_3; 2.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00358; DSRM; 2.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00949; PAZ; 1.
DR SMART; SM00535; RIBOc; 2.
DR SUPFAM; SSF52540; SSF52540; 2.
DR SUPFAM; SSF69065; SSF69065; 3.
DR PROSITE; PS51327; DICER_DSRBF; 1.
DR PROSITE; PS50137; DS_RBD; 2.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS50821; PAZ; 1.
DR PROSITE; PS00517; RNASE_3_1; 1.
DR PROSITE; PS50142; RNASE_3_2; 2.
PE 3: Inferred from homology;
KW Complete proteome {ECO:0000313|Proteomes:UP000007305};
KW Reference proteome {ECO:0000313|Proteomes:UP000007305};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00657}.
FT DOMAIN 32 190 Helicase ATP-binding.
FT {ECO:0000259|PROSITE:PS51192}.
FT DOMAIN 366 528 Helicase C-terminal.
FT {ECO:0000259|PROSITE:PS51194}.
FT DOMAIN 551 641 Dicer dsRNA-binding fold.
FT {ECO:0000259|PROSITE:PS51327}.
FT DOMAIN 879 943 PAZ. {ECO:0000259|PROSITE:PS50821}.
FT DOMAIN 960 1138 RNase III. {ECO:0000259|PROSITE:PS50142}.
FT DOMAIN 1179 1323 RNase III. {ECO:0000259|PROSITE:PS50142}.
FT DOMAIN 1349 1416 DRBM (double-stranded RNA-binding).
FT {ECO:0000259|PROSITE:PS50137}.
FT DOMAIN 1522 1598 DRBM (double-stranded RNA-binding).
FT {ECO:0000259|PROSITE:PS50137}.
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CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 879 943 iprf:PAZ [T]
FT MYHIT 1522 1598 iprf:DS_RBD [T]
FT MYHIT 990 1158 ismart:RIBOc [T]
FT MYHIT 842 965 ipfam:PAZ [T]
FT MYHIT 1214 1323 ipfam:Ribonuclease_3 [T]
FT MYHIT 32 190 iprf:HELICASE_ATP_BIND_1 [T]
FT MYHIT 21 236 ismart:DEXDc [T]
FT MYHIT 818 969 ismart:PAZ [T]
FT MYHIT 1214 1222 ipat:RNASE_3_1 [T]
FT MYHIT 1179 1323 iprf:RNASE_3_2 [T]
FT MYHIT 960 1138 iprf:RNASE_3_2 [T]
FT MYHIT 367 485 ipfam:Helicase_C [T]
FT MYHIT 1349 1416 iprf:DS_RBD [T]
FT MYHIT 366 528 iprf:HELICASE_CTER [T]
FT MYHIT 404 487 ismart:HELICc [T]
FT MYHIT 36 190 ipfam:ResIII [T]
FT MYHIT 1008 1138 ipfam:Ribonuclease_3 [T]
FT MYHIT 1523 1597 ismart:DSRM [T]
FT MYHIT 1194 1346 ismart:RIBOc [T]
FT MYHIT 551 641 iprf:DICER_DSRBF [T]
FT MYHIT 551 634 ipfam:Dicer_dimer [T]
FT MYHIT 1350 1415 ismart:DSRM [T]
SQ SEQUENCE 1609 AA; 182986 MW; 93158E6796DE6B63 CRC64;
MSEDEAESSS SGAAASEPKD PRTIARKYQL DLCKRAVDEN IIVYLGTGCG KTHIAVLLMY
ELGHLIRKPS REVCVFLAPT IPLVRQQAMV IADSTNFKVQ RYYGSGKHSR DHQAWEKEMG
EYEVLVMTPQ ILLHNLRHCF IRMDLIALLI FDECHHAQAQ KRHPYAQIMK EFYNNADKHP
RVFGMTASPI IGKGGSNKLT YTKCINSLEE LLNAKVCSVD NVELESVIAS PKVEVYFYGP
VGHSNLTTAY IKELGGYKFQ LLMCFEQSEC MLRESVCNFN ESLKKLKSLW RLHENLIFCL
QEVGLFGALQ AARTFLSSSS VSLDGKGADI NDYANKAMSL LSRDILEGPD ADSFDLETIE
EPFFSKKFAV LINVLSRYRL EENMKCIVFV KRIIVARVVV QILQNLKCLD FWRCEFLVGC
HSGLRNMSRD KMSSIIEKFS SGEVNLLVAT SVGEEGLDIQ TCCLVVRFDL PETVNSFIQS
RGRARMSKSK YVFLLERGNH SQEKLLDDYI TGEIIMDKEI NLRTSNDMFN CLEENIYRVN
DTGASISTAC SVSLLHRYCD NLPRDIFFVP SPSFFFVDDV DGIVCKLILP PNAAFRQVNG
QPCPSKDEAK RDACLKACIK LHELGALTDF LLPGQGSRKI KVSTTNNSES NKDDDESFRE
ELYEMLIPAV LRPSRCKLDS SFKLHFYYIE FIPIPADRRY QMFGLFVINR LPEESEKLDV
ELHLARARIV KAGIKYLGKI EFNKEEMILA HNFQEMFLKV LLDRSEFTPS YILLGNDGAL
DMDSTFYLLL PIKQKFYGDN MIDWPAVKRC LSSPAFQDPM GLSLHDSYLP NESLKLLGGT
YNKADVIGSL VYTPHTDLFF FVDAILDGTN AKSELNGATY AEHFKQRLHI KLSHPEQPLL
KAKQLFCLRN LLHNRQLEST ESEARELMEH FVELPPELCS LKIIGFSKDM GSSLSLLPSL
MYRLENLLVA IELKDVMSSY FPEASQISAS GILESLTTER CLERISLERL EVLGDAFLKY
VVGRHNFISY EGLDEGQLTR RRSDIVSNSN LYELSIRRNL QVYIRDQHFE PTQFFALGRP
CKVVCNPDRE ATLHPKNIDP DRRENCNLRC TKSHHWLHRK TIADVVESLL GVFIVECGFK
AAFAFLHWIG IKVDFENSAF YRVLDASSTN LSLMNYMNIS ELEELIGYTF KRKGLLLQAF
VHPSFNKHSG GCYQRMEFLG DAVLEYLMTS YLYSAYPDLK PGQLTDLKSL AVNNNSFAYV
AVKKSIHRYL IKDSNYLTTA VNKFANYVNL SSSEKDLLEE PTCPKVLGDI VESCVGAVLL
DSGFNLNHVW KLMLMLLKPI LSFCGMHIDP MRELRETCQY NGFDLGLPEP TKYNGEFHVK
VEVNINGKMI SCTAANRNSK DARKVAAQET LSKLKNYGYK HKRKSLEEIL RSTTKKESEL
IGYDEEPINV EDDIDMQMNN LLINGERTSI QSTAGDNKVD KNDANSGRNN KSNVVMQNGC
LPRGATDKIN QKEYHGDMVR KTARSFLYEL CAANYWKPPE FELCNDEGPS HLRKFTCKVL
IEITGTSVSL LECYSDPKLQ KRAAQEHAAE GALWYLKHLG YLPRDENRF
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