ID A0A1D6JA12_MAIZE Unreviewed; 1460 AA.
AC A0A1D6JA12;
DT 30-NOV-2016, integrated into UniProtKB/TrEMBL.
DT 30-NOV-2016, sequence version 1.
DT 10-MAY-2017, entry version 6.
DE SubName: Full=Dicer-like 103 {ECO:0000313|EMBL:AQK44794.1};
GN ORFNames=ZEAMMB73_Zm00001d025830 {ECO:0000313|EMBL:AQK44794.1};
OS Zea mays (Maize).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae;
OC Zea.
OX NCBI_TaxID=4577 {ECO:0000313|EnsemblPlants:Zm00001d025830_T007, ECO:0000313|Proteomes:UP000007305};
RN [1] {ECO:0000313|Proteomes:UP000007305}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305};
RX PubMed=19965430; DOI=10.1126/science.1178534;
RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S.,
RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D.,
RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K.,
RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K.,
RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M.,
RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M.,
RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K.,
RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J.,
RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S.,
RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K.,
RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S.,
RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M.,
RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H.,
RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C.,
RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T.,
RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L.,
RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P.,
RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A.,
RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C.,
RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y.,
RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z.,
RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D.,
RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C.,
RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M.,
RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S.,
RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G.,
RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R.,
RA Wing R.A., Wilson R.K.;
RT "The B73 maize genome: complexity, diversity, and dynamics.";
RL Science 326:1112-1115(2009).
RN [2] {ECO:0000313|EMBL:AQK44794.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Seedling {ECO:0000313|EMBL:AQK44794.1};
RG Maize Genome Sequencing Project;
RA Ware D.;
RT "Update maize B73 reference genome by single molecule sequencing
RT technologies.";
RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:Zm00001d025830_T007}
RP IDENTIFICATION.
RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d025830_T007};
RG EnsemblPlants;
RL Submitted (OCT-2016) to UniProtKB.
CC -!- SIMILARITY: Belongs to the helicase family. Dicer subfamily.
CC {ECO:0000256|PROSITE-ProRule:PRU00657}.
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DR EMBL; CM000786; AQK44794.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44800.1; -; Genomic_DNA.
DR EnsemblPlants; Zm00001d025830_T007; Zm00001d025830_T007; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T020; Zm00001d025830_T020; Zm00001d025830.
DR Gramene; Zm00001d025830_T007; Zm00001d025830_T007; Zm00001d025830.
DR Gramene; Zm00001d025830_T020; Zm00001d025830_T020; Zm00001d025830.
DR Proteomes; UP000007305; Chromosome 10.
DR GO; GO:0004525; F:ribonuclease III activity; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006396; P:RNA processing; IEA:InterPro.
DR CDD; cd00593; RIBOc; 2.
DR Gene3D; 1.10.1520.10; -; 2.
DR InterPro; IPR005034; Dicer_dimerisation_dom.
DR InterPro; IPR014720; dsRBD_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR003100; PAZ_dom.
DR InterPro; IPR000999; RNase_III_dom.
DR Pfam; PF03368; Dicer_dimer; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF02170; PAZ; 1.
DR Pfam; PF00636; Ribonuclease_3; 2.
DR SMART; SM00358; DSRM; 2.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00949; PAZ; 1.
DR SMART; SM00535; RIBOc; 2.
DR SUPFAM; SSF52540; SSF52540; 2.
DR SUPFAM; SSF69065; SSF69065; 3.
DR PROSITE; PS51327; DICER_DSRBF; 1.
DR PROSITE; PS50137; DS_RBD; 2.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS50821; PAZ; 1.
DR PROSITE; PS00517; RNASE_3_1; 1.
DR PROSITE; PS50142; RNASE_3_2; 2.
PE 3: Inferred from homology;
KW Complete proteome {ECO:0000313|Proteomes:UP000007305};
KW Reference proteome {ECO:0000313|Proteomes:UP000007305};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00657}.
FT DOMAIN 1 48 Helicase ATP-binding.
FT {ECO:0000259|PROSITE:PS51192}.
FT DOMAIN 217 379 Helicase C-terminal.
FT {ECO:0000259|PROSITE:PS51194}.
FT DOMAIN 402 492 Dicer dsRNA-binding fold.
FT {ECO:0000259|PROSITE:PS51327}.
FT DOMAIN 730 794 PAZ. {ECO:0000259|PROSITE:PS50821}.
FT DOMAIN 811 989 RNase III. {ECO:0000259|PROSITE:PS50142}.
FT DOMAIN 1030 1174 RNase III. {ECO:0000259|PROSITE:PS50142}.
FT DOMAIN 1200 1267 DRBM (double-stranded RNA-binding).
FT {ECO:0000259|PROSITE:PS50137}.
FT DOMAIN 1373 1449 DRBM (double-stranded RNA-binding).
FT {ECO:0000259|PROSITE:PS50137}.
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CC The following FT lines are automated annotations from the MyHits database.
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FT MYHIT 402 485 ipfam:Dicer_dimer [T]
FT MYHIT 1373 1449 iprf:DS_RBD [T]
FT MYHIT 1045 1197 ismart:RIBOc [T]
FT MYHIT 669 820 ismart:PAZ [T]
FT MYHIT 218 336 ipfam:Helicase_C [T]
FT MYHIT 859 989 ipfam:Ribonuclease_3 [T]
FT MYHIT 730 794 iprf:PAZ [T]
FT MYHIT 1201 1266 ismart:DSRM [T]
FT MYHIT 693 816 ipfam:PAZ [T]
FT MYHIT 1030 1174 iprf:RNASE_3_2 [T]
FT MYHIT 811 989 iprf:RNASE_3_2 [T]
FT MYHIT 217 379 iprf:HELICASE_CTER [T]
FT MYHIT 1200 1267 iprf:DS_RBD [T]
FT MYHIT 1374 1448 ismart:DSRM [T]
FT MYHIT 1 48 iprf:HELICASE_ATP_BIND_1 [T]
FT MYHIT 402 492 iprf:DICER_DSRBF [T]
FT MYHIT 841 1009 ismart:RIBOc [T]
FT MYHIT 1065 1073 ipat:RNASE_3_1 [T]
FT MYHIT 255 338 ismart:HELICc [T]
FT MYHIT 1065 1174 ipfam:Ribonuclease_3 [T]
SQ SEQUENCE 1460 AA; 166035 MW; 7EA7E325BDCC1E85 CRC64;
MDLIALLIFD ECHHAQAQKR HPYAQIMKEF YNNADKHPRV FGMTASPIIG KGGSNKLTYT
KCINSLEELL NAKVCSVDNV ELESVIASPK VEVYFYGPVG HSNLTTAYIK ELGGYKFQSE
CMLRESVCNF NESLKKLKSL WRLHENLIFC LQEVGLFGAL QAARTFLSSS SVSLDGKGAD
INDYANKAMS LLSRDILEGP DADSFDLETI EEPFFSKKFA VLINVLSRYR LEENMKCIVF
VKRIIVARVV VQILQNLKCL DFWRCEFLVG CHSGLRNMSR DKMSSIIEKF SSGEVNLLVA
TSVGEEGLDI QTCCLVVRFD LPETVNSFIQ SRGRARMSKS KYVFLLERGN HSQEKLLDDY
ITGEIIMDKE INLRTSNDMF NCLEENIYRV NDTGASISTA CSVSLLHRYC DNLPRDIFFV
PSPSFFFVDD VDGIVCKLIL PPNAAFRQVN GQPCPSKDEA KRDACLKACI KLHELGALTD
FLLPGQGSRK IKVSTTNNSE SNKDDDESFR EELYEMLIPA VLRPSRCKLD SSFKLHFYYI
EFIPIPADRR YQMFGLFVIN RLPEESEKLD VELHLARARI VKAGIKYLGK IEFNKEEMIL
AHNFQEMFLK VLLDRSEFTP SYILLGNDGA LDMDSTFYLL LPIKQKFYGD NMIDWPAVKR
CLSSPAFQDP MGLSLHDSYL PNESLKLLGG TYNKADVIGS LVYTPHTDLF FFVDAILDGT
NAKSELNGAT YAEHFKQRLH IKLSHPEQPL LKAKQLFCLR NLLHNRQLES TESEARELME
HFVELPPELC SLKIIGFSKD MGSSLSLLPS LMYRLENLLV AIELKDVMSS YFPEASQISA
SGILESLTTE RCLERISLER LEVLGDAFLK YVVGRHNFIS YEGLDEGQLT RRRSDIVSNS
NLYELSIRRN LQVYIRDQHF EPTQFFALGR PCKVVCNPDR EATLHPKNID PDRRENCNLR
CTKSHHWLHR KTIADVVESL LGVFIVECGF KAAFAFLHWI GIKVDFENSA FYRVLDASST
NLSLMNYMNI SELEELIGYT FKRKGLLLQA FVHPSFNKHS GGCYQRMEFL GDAVLEYLMT
SYLYSAYPDL KPGQLTDLKS LAVNNNSFAY VAVKKSIHRY LIKDSNYLTT AVNKFANYVN
LSSSEKDLLE EPTCPKVLGD IVESCVGAVL LDSGFNLNHV WKLMLMLLKP ILSFCGMHID
PMRELRETCQ YNGFDLGLPE PTKYNGEFHV KVEVNINGKM ISCTAANRNS KDARKVAAQE
TLSKLKNYGY KHKRKSLEEI LRSTTKKESE LIGYDEEPIN VEDDIDMQMN NLLINGERTS
IQSTAGDNKV DKNDANSGRN NKSNVVMQNG CLPRGATDKI NQKEYHGDMV RKTARSFLYE
LCAANYWKPP EFELCNDEGP SHLRKFTCKV LIEITGTSVS LLECYSDPKL QKRAAQEHAA
EGALWYLKHL GYLPRDENRF
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