ID A0A0R4IR05_DANRE Unreviewed; 422 AA.
AC A0A0R4IR05;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 10-MAY-2017, entry version 10.
DE SubName: Full=Zgc:162183 {ECO:0000313|Ensembl:ENSDARP00000138888};
GN ORFNames=zgc:162183 {ECO:0000313|Ensembl:ENSDARP00000138888,
GN ECO:0000313|ZFIN:ZDB-GENE-070410-30};
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Cyprinidae; Danio.
OX NCBI_TaxID=7955 {ECO:0000313|Ensembl:ENSDARP00000138888, ECO:0000313|Proteomes:UP000000437};
RN [1] {ECO:0000313|Ensembl:ENSDARP00000138888, ECO:0000313|Proteomes:UP000000437}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000138888,
RC ECO:0000313|Proteomes:UP000000437};
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
RA Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
RA McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
RA Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
RA Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
RA Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
RA Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
RA Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
RA Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
RA Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
RA Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
RA Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
RA Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
RA Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
RA Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA Saunders D., Wallis J., Babbage A., Hammond S.,
RA Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
RA Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
RA Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
RA Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
RA Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
RA Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
RA Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
RA Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
RA Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
RA Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
RA Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the
RT human genome.";
RL Nature 496:498-503(2013).
RN [2] {ECO:0000313|Ensembl:ENSDARP00000138888}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000138888};
RG Ensembl;
RL Submitted (NOV-2015) to UniProtKB.
CC -!- CAUTION: The sequence shown here is derived from an Ensembl
CC automatic analysis pipeline and should be considered as
CC preliminary data. {ECO:0000313|Ensembl:ENSDARP00000138888}.
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DR EMBL; CU928227; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR Ensembl; ENSDART00000169735; ENSDARP00000138888; ENSDARG00000074663.
DR ZFIN; ZDB-GENE-070410-30; zgc:162183.
DR GeneTree; ENSGT00390000001630; -.
DR OMA; PEYWKTV; -.
DR Proteomes; UP000000437; Chromosome 17.
DR ExpressionAtlas; A0A0R4IR05; baseline.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR InterPro; IPR001660; SAM.
DR InterPro; IPR013761; SAM/pointed.
DR InterPro; IPR025749; Sphingomyelin_synth-like_dom.
DR Pfam; PF14360; PAP2_C; 1.
DR Pfam; PF00536; SAM_1; 1.
DR SMART; SM00454; SAM; 1.
DR SUPFAM; SSF47769; SSF47769; 1.
DR PROSITE; PS50105; SAM_DOMAIN; 1.
PE 4: Predicted;
KW Complete proteome {ECO:0000313|Proteomes:UP000000437};
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000000437};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 161 184 Helical. {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 204 227 Helical. {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 239 261 Helical. {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 303 322 Helical. {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 329 348 Helical. {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 354 374 Helical. {ECO:0000256|SAM:Phobius}.
FT DOMAIN 22 88 SAM (sterile alpha motif).
FT {ECO:0000259|PROSITE:PS50105}.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 21 85 ipfam:SAM_1 [T]
FT MYHIT 22 88 iprf:SAM_DOMAIN [T]
FT MYHIT 299 372 ipfam:PAP2_C [T]
FT MYHIT 19 88 ismart:SAM [T]
SQ SEQUENCE 422 AA; 48130 MW; E1AF5ABC5FF48281 CRC64;
MVMHKQQKFC MPSSRCTGVE GWSSKQVAVW LREQGFREYV DLLCSKHRLD GPSLLCLTEK
DLRSPPLELK VLGDIKRLSL AIRRLQKHYT TLTHSDSSAL SKIDTGGTEQ TLSNGYLERA
SIDHQHCNGT VATVDGDHSY SNGKRKSHCG RLDPEYWKTA LGALYAMMVC GVTSFVMVLV
HERVPDMRTY PPLPDIFLDS VPRIPWAFAM AEACAVVLGS MLMLVLLMHR HRSILFRRLC
NLTGTVFLLR CVTMFVTSLS VPGHHLQCSG KIYGDAWTKV QRALEIWSGL GMSLTGVHTC
GDYMFSGHTV VLTMLNFFVT EYTPRNWNFI HTMSWVLNLF GIFFILAAHE HYSIDVFIAF
YITTRLFLYY HTLANTQAYQ HSRRARVWFP LFSFFECNVL GPVPNEYCWP FPTPSFINIL
LG
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